C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | protein phosphatase 1, regulatory subunit 42 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000522909  |
PPP1R42-011 |
ENSG00000178125 |
9606 | - |
8:66964200-67021345  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0003BD | CIL_0003BD_0001 | CGP | 8:66946501-67056604 |
| CIL_0003BC | CIL_0003BC_0001 | CGP | 8:66964099-67083783 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0002177 | ISS | manchette |
| GO:0003779 | ISS | actin binding |
| GO:0005515 | IEA | protein binding |
| GO:0005737 | IEA | cytoplasm |
| GO:0005813 | ISS | centrosome |
| GO:0005815 | ISS | microtubule organizing center |
| GO:0015630 | ISS | microtubule cytoskeleton |
| GO:0015631 | ISS | tubulin binding |
| GO:0045502 | ISS | dynein binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000027049
|
Ppp1r42-001 | protein_coding | Mus_musculus | 0 | 1297 |
|
ENSMUST00000124874
|
Ppp1r42-006 | nonsense_mediated_decay | Mus_musculus | 0 | 1035 |
|
ENSMUST00000176398
|
Ppp1r42-007 | protein_coding | Mus_musculus | 0 | 830 |
|
ENSMUST00000130102
|
Ppp1r42-002 | nonsense_mediated_decay | Mus_musculus | 0 | 800 |
|
ENSMUST00000155163
|
Ppp1r42-003 | retained_intron | Mus_musculus | 0 | 704 |
|
ENSMUST00000147000
|
Ppp1r42-005 | protein_coding | Mus_musculus | 0 | 313 |
