C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027288 Cnga3-201 ENSMUSG00000026114 10090 + 1:37219261-37263383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027288
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027288 0.009±0.00 0.237±0.06 0.025±0.01 0.086±0.05 0.163±0.08 0.413±0.25 0.008±0.00 0.003±0.00 0.019±0.01 0.271±0.08 0.007±0.00 0.007±0.01 0.411±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002U5 CIL_0002U5_0002 CGP 1:37219261-37410736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0005221 IPI intracellular cyclic nucleotide activated cation channel activity
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006812 IEA cation transport
GO:0007601 IEA visual perception
GO:0007603 IBA phototransduction, visible light
GO:0008022 IEA protein C-terminus binding
GO:0030425 IEA dendrite
GO:0030553 IBA cGMP binding
GO:0031960 IEA response to corticosteroid
GO:0032026 IEA response to magnesium ion
GO:0034220 IEA ion transmembrane transport
GO:0042391 IBA regulation of membrane potential
GO:0042622 IEA photoreceptor outer segment membrane
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0046549 IMP retinal cone cell development
GO:0051591 IEA response to cAMP
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IEA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272602 CNGA3-001 protein_coding Homo_sapiens 0 1749
ENST00000329903 CNGA2-001 protein_coding Homo_sapiens 0 580
ENST00000393504 CNGA3-201 protein_coding Homo_sapiens 0 1749
ENST00000409937 CNGA3-003 protein_coding Homo_sapiens 0 1749
ENST00000414432 USP32P2-002 retained_intron Homo_sapiens 0.00002 57
ENST00000436404 CNGA3-002 protein_coding Homo_sapiens 0 1786
ENST00000444558 USP32P1-006 processed_transcript Homo_sapiens 0.00002 57
ENST00000522166 CHCHD7-003 retained_intron Homo_sapiens 0.000001 60

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