C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family B (MDR/TAP), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027396 Abcb6-001 ENSMUSG00000026198 10090 - 1:75171717-75180392 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027396
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027396 27.654±4.88 22.985±1.06 22.465±11.64 18.272±3.40 36.438±2.34 13.195±1.20 31.954±3.32 46.479±13.42 18.234±3.49 10.617±0.48 22.917±5.49 11.535±1.59 11.190±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006EB CIL_0006EB_0002 CGP 1:75168646-75180392
CIL_0006EA CIL_0006EA_0002 CGP 1:75171717-75192196

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005740 IEA mitochondrial envelope
GO:0005741 IEA mitochondrial outer membrane
GO:0005768 IDA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006779 IEA porphyrin-containing compound biosynthetic process
GO:0007420 IEA brain development
GO:0015439 IEA heme-transporting ATPase activity
GO:0015562 IEA efflux transmembrane transporter activity
GO:0015886 IEA heme transport
GO:0016021 IBA integral component of membrane
GO:0020037 IEA heme binding
GO:0031307 IEA integral component of mitochondrial outer membrane
GO:0042626 IBA ATPase activity, coupled to transmembrane movement of substances
GO:0043588 IEA skin development
GO:0055085 IBA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265316 ABCB6-001 protein_coding Homo_sapiens 0 2926
ENST00000295750 ABCB6-005 protein_coding Homo_sapiens 0 2191
ENST00000417678 ABCB6-003 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000443805 ABCB6-012 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000446716 ATG9A-006 nonsense_mediated_decay Homo_sapiens 0 1371
ENST00000448398 ABCB6-015 nonsense_mediated_decay Homo_sapiens 0 651
ENST00000452545 ABCB6-007 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000485773 ABCB6-013 retained_intron Homo_sapiens 0 333
ENST00000487380 ABCB6-014 retained_intron Homo_sapiens 0 459
ENST00000492543 ABCB6-011 retained_intron Homo_sapiens 0 542
ENST00000492953 ABCB6-008 retained_intron Homo_sapiens 0 549
ENST00000496984 ABCB6-009 retained_intron Homo_sapiens 0 433
ENST00000497882 ABCB6-006 retained_intron Homo_sapiens 0 1387

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