C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027432 Psmd1-001 ENSMUSG00000026229 10090 + 1:86064619-86139151 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027432
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027432 17.962±4.37 23.533±1.15 33.197±4.07 9.115±3.20 4.923±0.00 12.397±3.07 17.435±1.76 20.695±11.08 12.345±2.22 28.045±3.76 28.042±10.76 41.340±17.93 14.442±2.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076M CIL_00076M_0002 CGP 1:86045863-86139151
CIL_0004KX CIL_0004KX_0003 CGP 1:86064387-86139151

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IDA proteasome complex
GO:0005515 IPI protein binding
GO:0022624 IDA proteasome accessory complex
GO:0030234 IEA enzyme regulator activity
GO:0042176 IEA regulation of protein catabolic process
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308696 PSMD1-001 protein_coding Homo_sapiens 0 4012
ENST00000373635 PSMD1-201 protein_coding Homo_sapiens 0 3413
ENST00000409643 PSMD1-003 protein_coding Homo_sapiens 0 3367
ENST00000431051 PSMD1-002 nonsense_mediated_decay Homo_sapiens 0 3035
ENST00000440838 PSMD1-005 protein_coding Homo_sapiens 0 874
ENST00000444007 PSMD1-006 protein_coding Homo_sapiens 0 490
ENST00000447633 PSMD1-009 protein_coding Homo_sapiens 0 649
ENST00000467792 PSMD1-010 retained_intron Homo_sapiens 0 544
ENST00000488354 PSMD1-007 processed_transcript Homo_sapiens 2e-28 130
ENST00000619128 PSMD1-202 protein_coding Homo_sapiens 0 3879

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