C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308696 PSMD1-001 ENSG00000173692 9606 + 2:231056864-231172827 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308696 14.621±0.00 12.176±0.00 1.722±0.00 9.002±4.57 11.799±4.74 9.949±2.51 7.612±4.54 7.505±1.98 7.758±1.09 6.209±1.22 11.154±1.33 17.781±10.32 14.000±0.36 13.860±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076M CIL_00076M_0001 CGP 2:231037490-231172827
CIL_0004KX CIL_0004KX_0002 CGP 2:231056864-231172827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0000502 IDA:IEA proteasome complex
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0005488 IEA binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005838 TAS proteasome regulatory particle
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0022624 ISS proteasome accessory complex
GO:0030234 IEA enzyme regulator activity
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042176 IEA regulation of protein catabolic process
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0044281 TAS small molecule metabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027432 Psmd1-001 protein_coding Mus_musculus 0 4012
ENSMUST00000139715 Psmd1-002 nonsense_mediated_decay Mus_musculus 0 3035
ENSDART00000007346 psmd1-201 protein_coding Danio_rerio 0 1609
ENSDART00000144100 psmd1-001 protein_coding Danio_rerio 0 1589
ENSMUST00000152184 Psmd1-007 processed_transcript Mus_musculus 0 985
ENSMUST00000149946 Psmd1-009 retained_intron Mus_musculus 0 479
ENSMUST00000133480 Psmd1-005 retained_intron Mus_musculus 0 479
ENSMUST00000127104 Psmd1-006 processed_transcript Mus_musculus 0 459
ENSMUST00000143200 Psmd1-003 processed_transcript Mus_musculus 0 207
ENSMUST00000147807 Psmd1-004 retained_intron Mus_musculus 0 207

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