C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000619128 PSMD1-202 ENSG00000173692 9606 + 2:231060356-231172824 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungOvaryPlacentaTestisENST00000619128
Transcript ID Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000619128 5.302±0.00 5.848±0.00 1.495±0.00 4.230±0.00 3.290±0.00 7.496±2.57 10.887±4.56 5.128±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076M CIL_00076M_0001 CGP 2:231037490-231172827
CIL_0004KX CIL_0004KX_0002 CGP 2:231056864-231172827

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0005488 IEA binding
GO:0030234 IEA enzyme regulator activity
GO:0042176 IEA regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027432 Psmd1-001 protein_coding Mus_musculus 0 3879
ENSMUST00000139715 Psmd1-002 nonsense_mediated_decay Mus_musculus 0 3035
ENSDART00000144100 psmd1-001 protein_coding Danio_rerio 0 1589
ENSDART00000007346 psmd1-201 protein_coding Danio_rerio 0 1585
ENSMUST00000152184 Psmd1-007 processed_transcript Mus_musculus 0 985
ENSMUST00000149946 Psmd1-009 retained_intron Mus_musculus 0 479
ENSMUST00000127104 Psmd1-006 processed_transcript Mus_musculus 0 460
ENSMUST00000133480 Psmd1-005 retained_intron Mus_musculus 0 429
ENSMUST00000143200 Psmd1-003 processed_transcript Mus_musculus 0.0000000000009 81
ENSMUST00000147807 Psmd1-004 retained_intron Mus_musculus 0.00000000004 75

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