C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004KX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000003189-ENSDARG00000003189 CGP 7955 22:40616328-40701704
GeneTranscriptPositionBiotype
ENSDARG00000003189 (psmd1)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 		ENSDART00000007346 (psmd1-201) 40616328-40701704 protein_coding
ENSDART00000133030 (psmd1-002) 40693218-40701704 processed_transcript
ENSDART00000144100 (psmd1-001) 40620833-40701704 protein_coding
ENSDARG00000070940 (htr2b)
5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled 		ENSDART00000104569 (htr2b-201) 40656507-40672030 protein_coding
CIL_0004KX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173692-ENSG00000173692 CGP 9606 2:231056864-231172827
GeneTranscriptPositionBiotype
ENSG00000135914 (HTR2B)
5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled 		ENST00000258400 (HTR2B-001) 231108230-231125118 protein_coding
ENSG00000173692 (PSMD1)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 		ENST00000308696 (PSMD1-001) 231056864-231172827 protein_coding
ENST00000373635 (PSMD1-201) 231056864-231172824 protein_coding
ENST00000409643 (PSMD1-003) 231056894-231170712 protein_coding
ENST00000431051 (PSMD1-002) 231056867-231165235 nonsense_mediated_decay
ENST00000440838 (PSMD1-005) 231056875-231070106 protein_coding
ENST00000444007 (PSMD1-006) 231066904-231075566 protein_coding
ENST00000447633 (PSMD1-009) 231083564-231139070 protein_coding
ENST00000467792 (PSMD1-010) 231153469-231163710 retained_intron
ENST00000477120 (PSMD1-011) 231163093-231165287 retained_intron
ENST00000481003 (PSMD1-012) 231164959-231165894 retained_intron
ENST00000488354 (PSMD1-007) 231085080-231109122 processed_transcript
ENST00000491229 (PSMD1-008) 231170402-231172760 retained_intron
ENST00000619128 (PSMD1-202) 231060356-231172824 protein_coding
ENSG00000201574 (RNU1-93P)
RNA, U1 small nuclear 93, pseudogene 		ENST00000364704 (RNU1-93P-201) 231133462-231133630 snRNA
CIL_0004KX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026229-ENSMUSG00000026229 CGP 10090 1:86064387-86139151
GeneTranscriptPositionBiotype
ENSMUSG00000026229 (Psmd1)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 		ENSMUST00000027432 (Psmd1-001) 86064619-86139151 protein_coding
ENSMUST00000127104 (Psmd1-006) 86064871-86075819 processed_transcript
ENSMUST00000133480 (Psmd1-005) 86064692-86072284 retained_intron
ENSMUST00000139715 (Psmd1-002) 86064619-86132749 nonsense_mediated_decay
ENSMUST00000143200 (Psmd1-003) 86064387-86071660 processed_transcript
ENSMUST00000147807 (Psmd1-004) 86064387-86070776 retained_intron
ENSMUST00000149946 (Psmd1-009) 86127867-86132767 retained_intron
ENSMUST00000152184 (Psmd1-007) 86110817-86132800 processed_transcript
ENSMUST00000189234 (Psmd1-010) 86064641-86067662 retained_intron
ENSMUSG00000077274 (Gm22786)
predicted gene, 22786 		ENSMUST00000104086 (Gm22786-201) 86087301-86087422 snoRNA
ENSMUSG00000094638 (Gm21972)
predicted gene 21972 		ENSMUST00000135197 (Gm21972-001) 86133637-86162788 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KX_0001ENSDARG00000003189ENSDART00000007346ENSDART00000133030ENSDART00000144100ENSDARG00000070940ENSDART00000104569CIL_0004KX_0002ENSG00000135914ENST00000258400ENSG00000173692ENST00000308696ENST00000373635ENST00000409643ENST00000431051ENST00000440838ENST00000444007ENST00000447633ENST00000467792ENST00000477120ENST00000481003ENST00000488354ENST00000491229ENST00000619128ENSG00000201574ENST00000364704CIL_0004KX_0003ENSMUSG00000026229ENSMUST00000027432ENSMUST00000127104ENSMUST00000133480ENSMUST00000139715ENSMUST00000143200ENSMUST00000147807ENSMUST00000149946ENSMUST00000152184ENSMUST00000189234ENSMUSG00000077274ENSMUST00000104086ENSMUSG00000094638ENSMUST00000135197
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KX_0001ENSDARG00000003189ENSDART00000007346ENSDART00000133030ENSDART00000144100ENSDARG00000070940ENSDART00000104569CIL_0004KX_0002ENSG00000135914ENST00000258400ENSG00000173692ENST00000308696ENST00000373635ENST00000409643ENST00000431051ENST00000619128ENSG00000201574ENST00000364704CIL_0004KX_0003ENSMUSG00000026229ENSMUST00000027432ENSMUST00000139715ENSMUST00000152184ENSMUSG00000077274ENSMUST00000104086ENSMUSG00000094638ENSMUST00000135197
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003189 ENSDART00000007346 N/A N/A N/A 10.708±0.00 N/A N/A 10.721±0.00 15.431±0.00 0.573±0.00 N/A N/A N/A N/A N/A
ENSDART00000133030 N/A N/A N/A 0.731±0.00 N/A N/A N/A 1.657±0.06 N/A N/A N/A N/A N/A N/A
ENSDART00000144100 N/A N/A N/A 10.385±0.00 N/A N/A 11.128±6.81 2.662±0.00 3.708±0.00 N/A 21.845±0.00 N/A N/A N/A
ENSDARG00000070940 ENSDART00000104569 N/A N/A N/A 0.196±0.00 N/A N/A 0.103±0.01 0.238±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135914 ENST00000258400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.566±0.00 N/A
ENSG00000173692 ENST00000308696 14.621±0.00 12.176±0.00 1.722±0.00 9.002±4.57 11.799±4.74 9.949±2.51 7.612±4.54 7.505±1.98 7.758±1.09 6.209±1.22 11.154±1.33 17.781±10.32 14.000±0.36 13.860±0.00
ENST00000373635 N/A N/A N/A N/A N/A 6.914±0.00 N/A 6.521±0.00 N/A N/A N/A N/A N/A 6.013±0.00
ENST00000409643 7.545±0.00 4.609±0.00 N/A 25.231±0.00 6.634±0.00 N/A 4.937±0.00 6.849±0.00 N/A 2.810±1.03 6.172±0.00 10.928±0.00 13.336±0.00 7.258±0.28
ENST00000431051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.443±0.00 N/A 5.014±0.00
ENST00000440838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619128 N/A N/A N/A 5.302±0.00 5.848±0.00 N/A 1.495±0.00 N/A 4.230±0.00 3.290±0.00 N/A 7.496±2.57 10.887±4.56 5.128±0.00
ENSG00000201574 ENST00000364704 N/A 0.089±0.00 1.808±0.00 0.373±0.00 4.019±0.00 N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026229 ENSMUST00000027432 17.962±4.37 N/A 23.533±1.15 33.197±4.07 9.115±3.20 4.923±0.00 12.397±3.07 17.435±1.76 20.695±11.08 12.345±2.22 28.045±3.76 28.042±10.76 41.340±17.93 14.442±2.66
ENSMUST00000127104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139715 23.075±3.73 15.301±1.19 N/A 19.365±5.30 20.161±6.06 13.073±3.93 14.770±2.55 14.442±3.35 14.865±7.44 22.254±1.84 N/A 28.029±6.93 N/A 13.696±1.45
ENSMUST00000143200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152184 19.060±0.00 N/A N/A N/A 26.530±6.05 N/A N/A 16.986±0.00 N/A N/A N/A 20.226±0.00 N/A N/A
ENSMUST00000189234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077274 ENSMUST00000104086 N/A N/A N/A N/A N/A N/A N/A N/A 15.175±0.00 N/A N/A 15.401±0.00 19.240±0.00 N/A
ENSMUSG00000094638 ENSMUST00000135197 N/A N/A N/A 69.022±0.00 N/A N/A N/A N/A N/A N/A N/A 58.602±0.00 72.045±23.30 N/A

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