C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 16-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027512 Atg16l1-001 ENSMUSG00000026289 10090 + 1:87756013-87792428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027512 8.456±1.15 12.446±3.59 5.635±1.17 9.999±2.69 8.022±3.80 3.694±1.16 2.335±0.89 2.898±0.92 4.470±1.44 5.652±1.59 1.200±0.11 8.829±4.18 3.995±1.05 1.091±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HZ CIL_0003HZ_0002 CGP 1:87620312-87792428
CIL_0004L2 CIL_0004L2_0003 CGP 1:87755870-87845158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 TAS autophagic vacuole assembly
GO:0000421 IDA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005776 IDA autophagic vacuole
GO:0005930 IDA axoneme
GO:0015031 IEA protein transport
GO:0039689 IMP negative stranded viral RNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347464 ATG16L1-201 protein_coding Homo_sapiens 0 1266
ENST00000373525 ATG16L1-004 protein_coding Homo_sapiens 0 965
ENST00000392017 ATG16L1-001 protein_coding Homo_sapiens 0 2329
ENST00000392018 ATG16L1-005 protein_coding Homo_sapiens 0 1267
ENST00000392020 ATG16L1-003 protein_coding Homo_sapiens 0 1266
ENST00000392021 ATG16L1-002 nonsense_mediated_decay Homo_sapiens 0 2300
ENST00000417017 ATG16L1-013 protein_coding Homo_sapiens 0 492
ENST00000419681 ATG16L1-006 protein_coding Homo_sapiens 0 289
ENST00000431917 ATG16L1-012 protein_coding Homo_sapiens 0 327
ENST00000444735 ATG16L1-007 protein_coding Homo_sapiens 0 309
ENST00000464645 ATG16L1-017 processed_transcript Homo_sapiens 0 686
ENST00000472242 ATG16L1-018 retained_intron Homo_sapiens 0 361
ENST00000473865 ATG16L1-019 retained_intron Homo_sapiens 0 592
ENST00000474148 ATG16L1-008 retained_intron Homo_sapiens 0 944
ENST00000479942 ATG16L1-009 retained_intron Homo_sapiens 0 1701
ENST00000485623 ATG16L1-014 retained_intron Homo_sapiens 0 490
ENST00000492298 ATG16L1-016 retained_intron Homo_sapiens 0 268
ENST00000498620 ATG16L1-015 processed_transcript Homo_sapiens 0 516

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