C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear VCP-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027797 Nvl-201 ENSMUSG00000026516 10090 - 1:181093423-181144157 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027797 3.122±1.15 1.741±0.54 6.872±2.04 11.575±3.96 2.943±0.32 1.960±0.74 1.742±0.35 2.133±1.24 6.218±5.51 2.440±1.23 1.876±0.58 7.273±7.30 14.846±10.73 4.637±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IP CIL_0008IP_0002 VISTA 1:180955937-181559663
CIL_0000BX CIL_0000BX_0003 CGP 1:181051237-181144157
CIL_0005S3 CIL_0005S3_0002 CGP 1:181093423-181168994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281701 NVL-001 protein_coding Homo_sapiens 0 2856
ENST00000340871 NVL-017 protein_coding Homo_sapiens 0 1936
ENST00000391875 NVL-002 protein_coding Homo_sapiens 0 2752
ENST00000436927 NVL-006 protein_coding Homo_sapiens 0 219
ENST00000461466 NVL-020 processed_transcript Homo_sapiens 0 219
ENST00000461546 NVL-019 protein_coding Homo_sapiens 0 322
ENST00000467882 NVL-014 nonsense_mediated_decay Homo_sapiens 0 699
ENST00000468673 NVL-016 retained_intron Homo_sapiens 0 322
ENST00000469075 NVL-018 protein_coding Homo_sapiens 0 2296
ENST00000469968 NVL-003 protein_coding Homo_sapiens 0 2296
ENST00000470903 NVL-004 processed_transcript Homo_sapiens 0 219
ENST00000470989 NVL-022 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000482491 NVL-201 protein_coding Homo_sapiens 0 1936
ENST00000487758 NVL-009 retained_intron Homo_sapiens 0 219
ENST00000488718 NVL-024 protein_coding Homo_sapiens 0 390

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