C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox transcription factor 1 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028003 Lmx1a-001 ENSMUSG00000026686 10090 + 1:167689557-167848741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonOvaryENSMUST00000028003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Ovary
ENSMUST00000028003 0.050±0.01 0.040±0.00 0.026±0.00 2.848±1.31 0.206±0.05 0.863±0.20 0.101±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MM CIL_0005MM_0002 CGP 1:167598384-167848741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 IMP regulation of cell growth
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IMP axon guidance
GO:0007417 IMP central nervous system development
GO:0007420 IEA brain development
GO:0008270 IEA zinc ion binding
GO:0010468 IMP regulation of gene expression
GO:0021542 IMP dentate gyrus development
GO:0021549 IMP cerebellum development
GO:0021766 IMP hippocampus development
GO:0021953 IMP central nervous system neuron differentiation
GO:0030182 IMP neuron differentiation
GO:0030901 IMP midbrain development
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IMP negative regulation of neuron differentiation
GO:0071542 IMP dopaminergic neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294816 LMX1A-002 protein_coding Homo_sapiens 0 2292
ENST00000342310 LMX1A-001 protein_coding Homo_sapiens 0 2294
ENST00000367893 LMX1A-003 protein_coding Homo_sapiens 0 1670
ENST00000489443 LMX1A-004 processed_transcript Homo_sapiens 0 909

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