C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: midkine
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028672 Mdk-001 ENSMUSG00000027239 10090 - 2:91929828-91932297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000028672
Transcript ID Adrenal Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000028672 0.156±0.04 1.529±0.00 0.472±0.39 0.134±0.05 0.239±0.13 5.242±0.93 4.296±0.00 2.385±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001662 IMP behavioral fear response
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0007614 IMP short-term memory
GO:0008083 IEA growth factor activity
GO:0008201 ISS heparin binding
GO:0009611 IDA response to wounding
GO:0009725 IEA response to hormone
GO:0016477 IEA cell migration
GO:0021542 IEP dentate gyrus development
GO:0021681 IMP cerebellar granular layer development
GO:0021766 IMP hippocampus development
GO:0021987 IEP cerebral cortex development
GO:0030154 IEA cell differentiation
GO:0030325 ISS adrenal gland development
GO:0030421 IMP defecation
GO:0042493 IEA response to drug
GO:0042995 IEA cell projection
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0050795 IMP regulation of behavior
GO:0051384 IEA response to glucocorticoid
GO:0051781 IEA positive regulation of cell division
GO:1901215 IDA negative regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359803 MDK-001 protein_coding Homo_sapiens 0 560
ENST00000395565 MDK-201 protein_coding Homo_sapiens 0 558
ENST00000395566 MDK-005 protein_coding Homo_sapiens 0 556
ENST00000405308 MDK-006 protein_coding Homo_sapiens 0 560
ENST00000407067 MDK-002 protein_coding Homo_sapiens 0 560
ENST00000481047 MDK-009 retained_intron Homo_sapiens 0 468
ENST00000489525 MDK-003 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000490240 MDK-008 retained_intron Homo_sapiens 0 468
ENST00000533283 MDK-012 processed_transcript Homo_sapiens 0 438
ENST00000533952 MDK-011 protein_coding Homo_sapiens 0 455

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