C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028769 Ptpra-001 ENSMUSG00000027303 10090 + 2:130450278-130554026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028769 26.364±11.31 66.628±29.88 34.438±2.55 44.216±11.16 29.291±17.70 37.567±9.33 7.131±3.66 17.233±6.65 11.184±2.93 39.561±8.13 3.477±0.45 59.236±25.78 35.134±13.73 4.470±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_00006B CIL_00006B_0002 CGP 2:130424339-130554026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0006468 IDA protein phosphorylation
GO:0008286 IMP insulin receptor signaling pathway
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216877 PTPRA-001 protein_coding Homo_sapiens 0 3589
ENST00000318266 PTPRA-002 protein_coding Homo_sapiens 0 3589
ENST00000356147 PTPRA-201 protein_coding Homo_sapiens 0 3589
ENST00000380393 PTPRA-003 protein_coding Homo_sapiens 0 3474
ENST00000399903 PTPRA-202 protein_coding Homo_sapiens 0 3474
ENST00000430705 PTPRA-007 protein_coding Homo_sapiens 0 433
ENST00000431048 PTPRA-008 protein_coding Homo_sapiens 0 403
ENST00000455631 PTPRA-004 protein_coding Homo_sapiens 0 1160

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