C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029057 Nfatc2-005 ENSMUSG00000027544 10090 - 2:168519098-168590191 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000029057
Transcript ID Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000029057 0.253±0.00 1.975±0.33 0.061±0.00 1.225±0.00 0.345±0.00 0.278±0.00 0.388±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000153 CIL_000153_0002 CGP 2:168260117-168601657
CIL_0007HZ CIL_0007HZ_0002 CGP 2:168476410-168742409

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001816 IDA cytokine production
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0030529 IDA ribonucleoprotein complex
GO:0043565 IDA sequence-specific DNA binding
GO:0044798 IDA nuclear transcription factor complex
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371564 NFATC2-001 protein_coding Homo_sapiens 0 2185
ENST00000396009 NFATC2-002 protein_coding Homo_sapiens 0 2185
ENST00000414705 NFATC2-004 protein_coding Homo_sapiens 0 2056
ENST00000609507 NFATC2-006 protein_coding Homo_sapiens 0 1376
ENST00000609943 NFATC2-005 protein_coding Homo_sapiens 0 2056
ENST00000610033 NFATC2-007 protein_coding Homo_sapiens 0 1376

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