C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371564 NFATC2-001 ENSG00000101096 9606 - 20:51386957-51542719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalLiverOvaryPlacentaTestisENST00000371564
Transcript ID Adipose Adrenal Liver Ovary Placenta Testis
ENST00000371564 0.259±0.00 0.956±0.00 0.063±0.00 0.437±0.00 1.967±0.57 0.614±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000153 CIL_000153_0001 CGP 20:51003656-51562831
CIL_0007HZ CIL_0007HZ_0001 CGP 20:51386957-51768634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS:IEA regulation of transcription, DNA-templated
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0015629 IDA actin cytoskeleton
GO:0016477 IDA cell migration
GO:0030890 IMP positive regulation of B cell proliferation
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0042493 IMP response to drug
GO:0045087 TAS innate immune response
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0050853 IMP B cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109184 Nfatc2-001 protein_coding Mus_musculus 0 3217
ENSMUST00000074618 Nfatc2-002 protein_coding Mus_musculus 0 3029
ENSMUST00000029057 Nfatc2-005 protein_coding Mus_musculus 0 2185
ENSMUST00000137451 Nfatc2-004 protein_coding Mus_musculus 0 2054
ENSMUST00000140137 Nfatc2-007 retained_intron Mus_musculus 0 2036
ENSMUST00000138546 Nfatc2-008 retained_intron Mus_musculus 0 1613
ENSMUST00000151292 Nfatc2-003 processed_transcript Mus_musculus 0 1605
ENSMUST00000171689 Nfatc2-201 protein_coding Mus_musculus 0 1376
ENSMUST00000099067 Nfatc2-006 processed_transcript Mus_musculus 0 1376
ENSDART00000112656 NFATC2 (1 of 2)-201 protein_coding Danio_rerio 0 409

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