C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 38A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000187762 TMEM38A-001 ENSG00000072954 9606 + 19:16661127-16690029 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000187762
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000187762 0.676±0.00 1.460±0.00 0.447±0.00 7.135±0.65 2.895±2.61 0.933±0.89 5.355±3.27 3.348±2.14 1.255±1.02 1.611±0.00 92.859±43.33 1.468±1.17 0.614±0.35 3.139±2.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006G1 CIL_0006G1_0001 CGP 19:16661127-16817963

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 IEA cation channel activity
GO:0005267 TAS potassium channel activity
GO:0015672 IEA monovalent inorganic cation transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031965 NAS nuclear membrane
GO:0033017 NAS sarcoplasmic reticulum membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034244 Tmem38a-201 protein_coding Mus_musculus 0 989
ENSMUST00000123806 Chuk-007 retained_intron Mus_musculus 0.00000000000002 86
ENSMUST00000103146 Rpl23-001 protein_coding Mus_musculus 0.00000000000006 84
ENSMUST00000026094 Hdgfrp3-002 protein_coding Mus_musculus 0.00000000000006 84
ENSMUST00000182612 Rsrc2-006 retained_intron Mus_musculus 0.0000000000002 82
ENSMUST00000183253 Rsrc2-005 retained_intron Mus_musculus 0.0000000000002 82
ENSMUST00000029371 Smad9-001 protein_coding Mus_musculus 0.0000000000002 82
ENSMUST00000182164 Birc6-018 retained_intron Mus_musculus 0.0000000000002 82
ENSMUST00000028403 Cybrd1-001 protein_coding Mus_musculus 0.000000000003 79
ENSMUST00000152102 Psmd3-005 retained_intron Mus_musculus 0.000000000003 79
ENSMUST00000141208 Vps13d-007 retained_intron Mus_musculus 0.000000000003 79
ENSMUST00000182881 Rbm25-017 retained_intron Mus_musculus 0.00000000001 77
ENSMUST00000141374 Dus2-005 retained_intron Mus_musculus 0.00000000004 75
ENSMUST00000153438 Cntd1-003 processed_transcript Mus_musculus 0.00000000004 75
ENSMUST00000139997 Becn1-004 retained_intron Mus_musculus 0.00000000004 75
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0.00000000004 75
ENSMUST00000139786 Mbtps2-004 retained_intron Mus_musculus 0.0000000001 73
ENSMUST00000020149 Ikbip-001 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000153924 Btbd19-003 processed_transcript Mus_musculus 0.0000000001 73
ENSMUST00000092627 9330159F19Rik-201 protein_coding Mus_musculus 0.0000000001 73
ENSMUST00000118379 Gm4994-001 processed_pseudogene Mus_musculus 0.000000002 69
ENSMUST00000118316 N4bp2l2-001 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000152022 Rasgrp2-016 retained_intron Mus_musculus 0.000000006 68
ENSMUST00000131628 Gpn1-002 retained_intron Mus_musculus 0.00000008 64
ENSMUST00000183545 Zfp280d-016 retained_intron Mus_musculus 0.0000003 62
ENSMUST00000035323 Spib-201 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000098483 Spib-202 protein_coding Mus_musculus 0.0000003 62

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