C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurobeachin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029374 Nbea-201 ENSMUSG00000027799 10090 - 3:55625205-56183701 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029374
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029374 4.053±2.02 1.707±1.04 1.253±0.62 20.773±6.79 0.840±0.48 0.706±0.27 1.083±0.21 0.949±0.68 0.151±0.08 3.072±1.26 0.234±0.04 3.357±1.36 0.304±0.12 1.340±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UJ CIL_0008UJ_0002 VISTA 3:55453971-56057759
CIL_0007OM CIL_0007OM_0002 UCNEbase 3:55625197-55966169
CIL_0004C5 CIL_0004C5_0003 CGP 3:55625205-56183701

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005802 IDA trans-Golgi network
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006605 ISS protein targeting
GO:0006892 NAS post-Golgi vesicle-mediated transport
GO:0008104 IDA protein localization
GO:0012505 IDA endomembrane system
GO:0019901 IDA protein kinase binding
GO:0030054 IEA cell junction
GO:0045211 NAS postsynaptic membrane
GO:0051018 NAS protein kinase A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000102566 nbeaa-201 protein_coding Danio_rerio 0 2074
ENSDART00000114630 nbeaa-001 protein_coding Danio_rerio 0 2058
ENSDART00000041157 nbeab-201 protein_coding Danio_rerio 0 1816
ENSDART00000155211 nbeab-001 protein_coding Danio_rerio 0 1707
ENSDART00000144529 nbeaa-002 protein_coding Danio_rerio 0 1131
ENST00000310336 NBEA-201 protein_coding Homo_sapiens 0 13170
ENST00000355171 C2orf27A-201 protein_coding Homo_sapiens 0 220
ENST00000379922 NBEA-003 protein_coding Homo_sapiens 0 3330
ENST00000379939 NBEA-001 protein_coding Homo_sapiens 0 13130
ENST00000400445 NBEA-202 protein_coding Homo_sapiens 0 13180
ENST00000420638 NBEAP3-001 unprocessed_pseudogene Homo_sapiens 0 359
ENST00000461581 NBEA-004 processed_transcript Homo_sapiens 1e-33 147
ENST00000463645 C2orf27A-004 processed_transcript Homo_sapiens 0 217
ENST00000466372 C2orf27A-002 processed_transcript Homo_sapiens 0 331
ENST00000497540 NBEA-002 processed_transcript Homo_sapiens 0 344
ENST00000537702 NBEA-203 protein_coding Homo_sapiens 0 4608
ENST00000554452 NBEAP1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1014
ENST00000555285 RP11-32B5.2-001 unprocessed_pseudogene Homo_sapiens 0 270
ENST00000612637 CTD-2314B22.2-001 processed_pseudogene Homo_sapiens 6e-39 163
ENST00000623058 C2orf27A-006 transcribed_unprocessed_pseudogene Homo_sapiens 0 893
ENST00000624391 C2orf27A-001 processed_transcript Homo_sapiens 0 302

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