C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029424 Pdcd10-006 ENSMUSG00000027835 10090 - 3:75517461-75556811 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029424
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029424 0.514±0.26 7.371±1.82 11.969±0.00 1.341±0.47 1.520±0.47 0.919±0.03 1.550±0.27 4.366±3.24 1.616±0.00 2.353±0.70 3.019±4.17 18.165±5.44 9.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049O CIL_00049O_0003 CGP 3:75516490-75643495

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000046902 pdcd10a-201 protein_coding Danio_rerio 0 496
ENSDART00000019063 pdcd10b-001 protein_coding Danio_rerio 0 440
ENST00000392750 PDCD10-001 protein_coding Homo_sapiens 0 1184
ENST00000461494 PDCD10-012 protein_coding Homo_sapiens 0 1184
ENST00000462725 PDCD10-013 protein_coding Homo_sapiens 0 769
ENST00000464360 PDCD10-010 protein_coding Homo_sapiens 0 460
ENST00000470131 PDCD10-005 protein_coding Homo_sapiens 0 1171
ENST00000471885 PDCD10-008 protein_coding Homo_sapiens 0 953
ENST00000473645 PDCD10-003 protein_coding Homo_sapiens 0 1184
ENST00000475915 PDCD10-014 protein_coding Homo_sapiens 0 1035
ENST00000479121 PDCD10-018 protein_coding Homo_sapiens 0 475
ENST00000481136 PDCD10-004 retained_intron Homo_sapiens 0 459
ENST00000483451 PDCD10-011 retained_intron Homo_sapiens 0 691
ENST00000487947 PDCD10-017 protein_coding Homo_sapiens 0 953
ENST00000492139 PDCD10-009 protein_coding Homo_sapiens 0 704
ENST00000492396 PDCD10-016 protein_coding Homo_sapiens 0 926
ENST00000494502 PDCD10-007 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000497056 PDCD10-002 protein_coding Homo_sapiens 0 1308

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