C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 10a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000046902 pdcd10a-201 ENSDARG00000035054 7955 - 18:4285184-4308975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000046902
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000046902 21.337±11.09 14.509±13.90 14.333±10.50 2.804±0.00 15.277±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049O CIL_00049O_0001 CGP 18:4285184-4343344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0001525 IEA angiogenesis
GO:0001568 IGI blood vessel development
GO:0001944 IGI vasculature development
GO:0003007 IGI heart morphogenesis
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006915 IEA apoptotic process
GO:0007507 IGI heart development
GO:0009790 IGI embryo development
GO:0016020 IEA membrane
GO:0048514 IGI blood vessel morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029424 Pdcd10-006 protein_coding Mus_musculus 0 496
ENSMUST00000122112 Gm14253-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000159217 Pdcd10-005 retained_intron Mus_musculus 4e-29 132
ENSMUST00000161137 Pdcd10-001 protein_coding Mus_musculus 0 516
ENSMUST00000162138 Pdcd10-002 protein_coding Mus_musculus 3e-40 169
ENST00000392750 PDCD10-001 protein_coding Homo_sapiens 0 494
ENST00000461494 PDCD10-012 protein_coding Homo_sapiens 0 494
ENST00000462725 PDCD10-013 protein_coding Homo_sapiens 0 311
ENST00000464360 PDCD10-010 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000470131 PDCD10-005 protein_coding Homo_sapiens 0 494
ENST00000471885 PDCD10-008 protein_coding Homo_sapiens 0 412
ENST00000473645 PDCD10-003 protein_coding Homo_sapiens 0 494
ENST00000475915 PDCD10-014 protein_coding Homo_sapiens 0 460
ENST00000481136 PDCD10-004 retained_intron Homo_sapiens 1e-30 137
ENST00000483451 PDCD10-011 retained_intron Homo_sapiens 0 272
ENST00000487947 PDCD10-017 protein_coding Homo_sapiens 0 412
ENST00000492139 PDCD10-009 protein_coding Homo_sapiens 0 279
ENST00000494502 PDCD10-007 nonsense_mediated_decay Homo_sapiens 3e-32 143
ENST00000497056 PDCD10-002 protein_coding Homo_sapiens 0 494

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