C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor A, paralog a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148537 roraa-001 ENSDARG00000031768 7955 + 25:34986538-35016527 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000148537
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000148537 10.127±2.94 1.016±0.32 0.299±0.03 0.040±0.00 0.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GZ CIL_0005GZ_0001 CGP 25:34896334-35055335

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029795 Rorc-001 protein_coding Mus_musculus 1e-25 122
ENSMUST00000034766 Rora-001 protein_coding Mus_musculus 0 254
ENST00000261523 RORA-003 protein_coding Homo_sapiens 0 889
ENST00000309157 RORA-002 protein_coding Homo_sapiens 0 889
ENST00000335670 RORA-001 protein_coding Homo_sapiens 0 889
ENST00000449337 RORA-005 protein_coding Homo_sapiens 0 889
ENST00000551975 RORA-004 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000557822 RORA-008 retained_intron Homo_sapiens 3e-21 106
ENST00000558234 RORA-006 retained_intron Homo_sapiens 2e-20 106
ENST00000559343 RORA-009 protein_coding Homo_sapiens 0 230
ENST00000560004 RORA-012 processed_transcript Homo_sapiens 0 320

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