C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029800 Tspan5-001 ENSMUSG00000028152 10090 + 3:138742195-138904433 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029800
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029800 10.056±4.36 43.033±15.54 22.453±0.54 27.373±1.01 11.598±3.12 7.917±0.85 1.498±0.20 8.500±1.94 0.961±0.55 14.988±0.40 0.556±0.19 21.287±6.54 1.246±0.37 2.878±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0051604 IDA protein maturation
GO:0090002 IEA establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305798 TSPAN5-001 protein_coding Homo_sapiens 0 1332
ENST00000505184 TSPAN5-004 protein_coding Homo_sapiens 0 1075
ENST00000507167 TSPAN5-010 retained_intron Homo_sapiens 0 503
ENST00000508798 TSPAN5-002 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000509168 TSPAN5-007 processed_transcript Homo_sapiens 0 678
ENST00000511651 TSPAN5-005 protein_coding Homo_sapiens 0 435
ENST00000511753 TSPAN5-003 retained_intron Homo_sapiens 0 809
ENST00000511800 TSPAN5-008 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000515287 TSPAN5-006 protein_coding Homo_sapiens 0 660
ENST00000515440 TSPAN5-009 nonsense_mediated_decay Homo_sapiens 0 431

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