C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029936 Gbp5-001 ENSMUSG00000040264 10090 + 3:142594847-142619179 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029936
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029936 0.076±0.03 0.062±0.02 0.963±0.00 0.066±0.00 0.428±0.12 0.376±0.17 0.025±0.00 0.085±0.06 0.261±0.27 0.093±0.04 0.013±0.00 0.137±0.08 0.027±0.02 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091X CIL_00091X_0002 VISTA 3:141937411-142539503
CIL_000033 CIL_000033_000D CGP 3:142496934-142619179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0019002 IDA GMP binding
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370466 GBP2-002 protein_coding Homo_sapiens 0 1219
ENST00000463660 GBP2-003 processed_transcript Homo_sapiens 0.0000004 62
ENST00000464839 GBP2-001 nonsense_mediated_decay Homo_sapiens 0 1219

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