C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 2, interferon-inducible
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464839 GBP2-001 ENSG00000162645 9606 - 1:89106132-89150456 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungOvaryTestisENST00000464839
Transcript ID Colon Heart Kidney Liver Lung Ovary Testis
ENST00000464839 0.848±0.00 0.164±0.00 0.964±0.00 1.589±0.00 6.068±4.70 2.624±0.00 1.405±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_0004 CGP 1:89052319-89150456
CIL_000033 CIL_000033_0006 CGP 1:89106132-89176040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006184 IEA GTP catabolic process
GO:0006955 TAS immune response
GO:0016020 IEA membrane
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060337 TAS type I interferon signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029936 Gbp5-001 protein_coding Mus_musculus 0 1219
ENSMUST00000165774 Gbp2-001 protein_coding Mus_musculus 0 1171
ENSMUST00000090127 Gbp5-201 protein_coding Mus_musculus 0 542
ENSMUST00000169572 Gbp2-002 nonsense_mediated_decay Mus_musculus 0 329

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