C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear cap binding protein subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030014 Ncbp1-001 ENSMUSG00000028330 10090 + 4:46138613-46172403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000030014
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000030014 14.926±1.94 10.715±1.48 12.812±1.07 26.010±9.18 12.462±1.50 10.330±1.14 8.179±0.28 15.376±12.49 10.638±0.16 18.763±2.11 23.967±10.22 68.630±16.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JE CIL_0002JE_0002 CGP 4:46038935-46138694
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_0002JD CIL_0002JD_0002 CGP 4:46114746-46172403
CIL_00029T CIL_00029T_0002 CGP 4:46138613-46196311

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000339 IEA RNA cap binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005845 ISS mRNA cap binding complex
GO:0005846 IEA nuclear cap binding complex
GO:0005886 IEA plasma membrane
GO:0006370 ISS 7-methylguanosine mRNA capping
GO:0006379 ISS mRNA cleavage
GO:0006406 ISS mRNA export from nucleus
GO:0006446 ISS regulation of translational initiation
GO:0030529 ISS ribonucleoprotein complex
GO:0031047 IEA gene silencing by RNA
GO:0031442 ISS positive regulation of mRNA 3'-end processing
GO:0044822 IEA poly(A) RNA binding
GO:0045292 IEA mRNA cis splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375130 NCBP1-004 protein_coding Homo_sapiens 0 433
ENST00000375147 NCBP1-001 protein_coding Homo_sapiens 0 3090
ENST00000478100 NCBP1-003 nonsense_mediated_decay Homo_sapiens 0 405

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