C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002JD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136925-ENSG00000136937 CGP 9606 9:97600080-97673748
GeneTranscriptPositionBiotype
ENSG00000136842 (TMOD1)
tropomodulin 1 		ENST00000259365 (TMOD1-001) 97501639-97601748 protein_coding
ENST00000375175 (TMOD1-002) 97555435-97601254 protein_coding
ENST00000395211 (TMOD1-201) 97501180-97601741 protein_coding
ENSG00000136925 (TSTD2)
thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 		ENST00000341170 (TSTD2-001) 97600083-97633575 protein_coding
ENST00000375163 (TSTD2-004) 97610210-97625775 retained_intron
ENST00000375165 (TSTD2-003) 97604069-97627404 nonsense_mediated_decay
ENST00000375172 (TSTD2-002) 97602718-97633301 nonsense_mediated_decay
ENST00000375173 (TSTD2-005) 97600080-97603155 retained_intron
ENST00000484708 (TSTD2-006) 97610845-97617852 processed_transcript
ENSG00000136937 (NCBP1)
nuclear cap binding protein subunit 1, 80kDa 		ENST00000375130 (NCBP1-004) 97666763-97670076 protein_coding
ENST00000375147 (NCBP1-001) 97633626-97673748 protein_coding
ENST00000478100 (NCBP1-003) 97633668-97650562 nonsense_mediated_decay
ENST00000491445 (NCBP1-002) 97672711-97673740 processed_transcript
ENSG00000231521 (RP11-244N9.4)
 ENST00000437864 (RP11-244N9.4-001) 97634515-97636051 antisense
CIL_0002JD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035495-ENSMUSG00000028330 CGP 10090 4:46114746-46172403
GeneTranscriptPositionBiotype
ENSMUSG00000028328 (Tmod1)
tropomodulin 1 		ENSMUST00000107773 (Tmod1-001) 46038935-46116032 protein_coding
ENSMUST00000128689 (Tmod1-003) 46077127-46099708 processed_transcript
ENSMUST00000136553 (Tmod1-004) 46082847-46090881 processed_transcript
ENSMUST00000155730 (Tmod1-005) 46100243-46114439 processed_transcript
ENSMUST00000156200 (Tmod1-002) 46039209-46090897 protein_coding
ENSMUSG00000028329 (Xpa)
xeroderma pigmentosum, complementation group A 		ENSMUST00000030013 (Xpa-001) 46175222-46196311 protein_coding
ENSMUST00000058232 (Xpa-002) 46155347-46196311 protein_coding
ENSMUST00000130051 (Xpa-006) 46184412-46186594 processed_transcript
ENSMUST00000132358 (Xpa-005) 46175222-46185649 nonsense_mediated_decay
ENSMUST00000141318 (Xpa-004) 46175222-46185682 processed_transcript
ENSMUST00000142380 (Xpa-003) 46182969-46196304 protein_coding
ENSMUSG00000028330 (Ncbp1)
nuclear cap binding protein subunit 1 		ENSMUST00000030014 (Ncbp1-001) 46138613-46172403 protein_coding
ENSMUST00000131187 (Ncbp1-003) 46157901-46160099 processed_transcript
ENSMUST00000133286 (Ncbp1-002) 46165196-46171979 processed_transcript
ENSMUSG00000035495 (Tstd2)
thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 		ENSMUST00000107770 (Tstd2-001) 46115732-46138438 protein_coding
ENSMUST00000107772 (Tstd2-002) 46114746-46138475 protein_coding
ENSMUST00000129929 (Tstd2-006) 46132146-46135778 protein_coding
ENSMUST00000137399 (Tstd2-007) 46128966-46131923 retained_intron
ENSMUST00000144495 (Tstd2-005) 46131997-46138409 protein_coding
ENSMUST00000147837 (Tstd2-003) 46131934-46138694 protein_coding
ENSMUST00000156021 (Tstd2-004) 46135502-46138455 protein_coding
ENSMUST00000160008 (Tstd2-008) 46123405-46138413 retained_intron
ENSMUSG00000088069 (Gm23250)
predicted gene, 23250 		ENSMUST00000157444 (Gm23250-201) 46118180-46118446 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JD_0001ENSG00000136842ENST00000259365ENST00000375175ENST00000395211ENSG00000136925ENST00000341170ENST00000375163ENST00000375165ENST00000375172ENST00000375173ENST00000484708ENSG00000136937ENST00000375130ENST00000375147ENST00000478100ENST00000491445ENSG00000231521ENST00000437864CIL_0002JD_0002ENSMUSG00000028328ENSMUST00000107773ENSMUST00000128689ENSMUST00000136553ENSMUST00000155730ENSMUST00000156200ENSMUSG00000028329ENSMUST00000030013ENSMUST00000058232ENSMUST00000130051ENSMUST00000132358ENSMUST00000141318ENSMUST00000142380ENSMUSG00000028330ENSMUST00000030014ENSMUST00000131187ENSMUST00000133286ENSMUSG00000035495ENSMUST00000107770ENSMUST00000107772ENSMUST00000129929ENSMUST00000137399ENSMUST00000144495ENSMUST00000147837ENSMUST00000156021ENSMUST00000160008ENSMUSG00000088069ENSMUST00000157444
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JD_0001ENSG00000136842ENST00000259365ENST00000395211ENSG00000136925ENST00000341170ENST00000375172ENST00000375173ENSG00000136937ENST00000375130ENST00000375147ENSG00000231521ENST00000437864CIL_0002JD_0002ENSMUSG00000028328ENSMUST00000107773ENSMUST00000128689ENSMUSG00000028329ENSMUST00000030013ENSMUST00000132358ENSMUST00000142380ENSMUSG00000028330ENSMUST00000030014ENSMUST00000133286ENSMUSG00000035495ENSMUST00000107770ENSMUST00000107772ENSMUSG00000088069ENSMUST00000157444
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136842 ENST00000259365 5.000±0.00 6.398±0.00 N/A 4.678±3.21 2.920±0.00 8.518±0.00 21.016±18.12 1.315±0.66 2.712±0.49 4.154±3.51 51.014±0.00 6.038±0.11 0.584±0.00 3.655±0.00
ENST00000375175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395211 N/A N/A N/A N/A 1.216±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136925 ENST00000341170 3.121±0.00 2.518±0.00 0.580±0.00 2.543±0.96 2.262±0.87 2.665±0.22 3.437±2.31 3.086±0.00 2.121±0.63 1.903±0.84 N/A 4.394±2.60 2.453±0.19 5.105±0.00
ENST00000375163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000375165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000375172 N/A N/A 0.814±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.882±0.00 N/A N/A
ENST00000375173 2.875±0.00 2.732±0.00 0.756±0.00 3.438±1.06 3.443±0.77 4.690±2.31 22.516±0.00 1.859±1.07 3.591±0.39 3.356±2.09 34.240±0.00 4.173±3.43 2.021±0.29 5.381±0.00
ENST00000484708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136937 ENST00000375130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.120±0.00 9.696±0.00 29.942±0.00
ENST00000375147 2.358±0.00 2.594±0.00 2.434±0.00 2.009±0.85 2.242±0.00 4.113±0.55 2.971±0.00 4.141±1.12 2.589±0.64 2.433±0.81 4.630±0.00 4.897±0.85 3.589±0.49 4.784±0.48
ENST00000478100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231521 ENST00000437864 N/A N/A N/A 0.157±0.00 N/A N/A 0.138±0.00 N/A N/A N/A 0.407±0.00 0.202±0.00 0.122±0.05 0.105±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028328 ENSMUST00000107773 N/A N/A N/A 6.679±0.00 8.566±1.54 N/A 29.208±7.05 N/A 13.218±7.66 10.788±0.41 21.379±0.93 N/A N/A N/A
ENSMUST00000128689 N/A N/A N/A 22.843±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028329 ENSMUST00000030013 N/A 21.191±3.18 18.522±1.08 N/A 19.672±2.72 14.451±3.34 N/A 18.819±4.37 9.631±0.77 22.321±3.36 N/A 36.796±6.55 N/A N/A
ENSMUST00000058232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 52.633±0.00 17.097±0.00 N/A
ENSMUST00000141318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142380 21.183±0.00 N/A N/A N/A N/A 16.263±0.00 N/A N/A N/A N/A N/A 29.230±6.81 N/A N/A
ENSMUSG00000028330 ENSMUST00000030014 14.926±1.94 10.715±1.48 12.812±1.07 26.010±9.18 12.462±1.50 10.330±1.14 N/A 8.179±0.28 15.376±12.49 10.638±0.16 N/A 18.763±2.11 23.967±10.22 68.630±16.78
ENSMUST00000131187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 93.123±0.00
ENSMUSG00000035495 ENSMUST00000107770 5.370±1.04 6.416±1.19 N/A N/A 7.046±0.97 6.587±0.96 N/A 3.243±0.00 2.957±0.72 N/A N/A 13.163±3.71 N/A N/A
ENSMUST00000107772 6.824±1.47 5.036±0.99 9.191±0.75 7.662±1.82 6.843±2.62 3.697±0.44 19.034±0.17 3.949±1.22 7.271±5.84 9.382±0.21 31.843±11.51 8.219±3.91 11.057±3.36 N/A
ENSMUST00000129929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088069 ENSMUST00000157444 N/A 0.421±0.00 0.184±0.00 0.196±0.03 N/A N/A N/A 0.546±0.17 0.223±0.12 0.390±0.05 0.368±0.00 1.156±0.48 0.436±0.19 0.640±0.00

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