C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear cap binding protein subunit 1, 80kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375147 NCBP1-001 ENSG00000136937 9606 + 9:97633626-97673748 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375147
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375147 2.358±0.00 2.594±0.00 2.434±0.00 2.009±0.85 2.242±0.00 4.113±0.55 2.971±0.00 4.141±1.12 2.589±0.64 2.433±0.81 4.630±0.00 4.897±0.85 3.589±0.49 4.784±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0001 VISTA 9:97562581-98164397
CIL_000853 CIL_000853_0001 VISTA 9:97573936-98178227
CIL_0009AR CIL_0009AR_0001 VISTA 9:97573936-98175680
CIL_0002JD CIL_0002JD_0001 CGP 9:97600080-97673748
CIL_00029T CIL_00029T_0001 CGP 9:97633626-97697357

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IDA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000339 IEA RNA cap binding
GO:0000387 TAS spliceosomal snRNP assembly
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 TAS:IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 TAS cytosol
GO:0005845 IDA mRNA cap binding complex
GO:0005846 IEA nuclear cap binding complex
GO:0005886 IDA plasma membrane
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006370 IDA 7-methylguanosine mRNA capping
GO:0006379 IDA mRNA cleavage
GO:0006406 IMP mRNA export from nucleus
GO:0006446 IDA regulation of translational initiation
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS:IEA RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030529 IDA ribonucleoprotein complex
GO:0031047 IEA gene silencing by RNA
GO:0031124 TAS mRNA 3'-end processing
GO:0031442 IDA positive regulation of mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045292 IEA mRNA cis splicing, via spliceosome
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030014 Ncbp1-001 protein_coding Mus_musculus 0 3090
ENSMUST00000133286 Ncbp1-002 processed_transcript Mus_musculus 0 582
ENSMUST00000123555 Parp3-004 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000067218 Parp3-001 protein_coding Mus_musculus 0.0000002 64
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.00003 57

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