C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374232 SNX30-001 ENSG00000148158 9606 + 9:112750838-112874987 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374232 2.369±0.00 0.614±0.00 2.510±0.00 8.220±3.19 1.804±0.96 2.538±1.01 0.650±0.29 2.640±1.50 1.688±0.23 5.370±1.46 0.652±0.00 1.964±0.68 0.768±0.61 7.383±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X4 CIL_0005X4_0001 CGP 9:112683926-112881671
CIL_0000Y7 CIL_0000Y7_0001 CGP 9:112750838-112890913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006915 IBA apoptotic process
GO:0035091 IBA:IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030080 Snx30-001 protein_coding Mus_musculus 0 1895
ENSMUST00000145199 Snx30-002 processed_transcript Mus_musculus 0 1024
ENSMUST00000143185 Snx30-003 processed_transcript Mus_musculus 0 658
ENSMUST00000123665 Snx30-004 processed_transcript Mus_musculus 0 300

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