C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear RNA activating complex, polypeptide 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030206 Snapc3-006 ENSMUSG00000028483 10090 + 4:83417724-83453340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungMuscleENSMUST00000030206
Transcript ID Adipose Breast Heart Kidney Liver Lung Muscle
ENSMUST00000030206 7.687±1.28 6.991±0.79 6.939±1.27 3.643±0.29 2.746±0.33 7.304±1.91 3.140±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0002 CGP 4:83220300-83467676
CIL_0005UX CIL_0005UX_0003 CGP 4:83417724-83486459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380799 SNAPC3-005 protein_coding Homo_sapiens 0 468
ENST00000380821 SNAPC3-002 protein_coding Homo_sapiens 0 1210
ENST00000467062 SNAPC3-001 nonsense_mediated_decay Homo_sapiens 0 1210
ENST00000490969 SNAPC3-003 nonsense_mediated_decay Homo_sapiens 0 1210
ENST00000610884 SNAPC3-201 protein_coding Homo_sapiens 0 1210

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