C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4C, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030279 Atg4c-001 ENSMUSG00000028550 10090 + 4:99193934-99259787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030279 2.761±0.52 1.538±0.25 2.762±0.27 2.486±1.12 1.370±0.67 0.917±0.50 1.067±0.15 2.933±0.49 1.762±0.75 2.165±0.49 1.921±0.42 2.531±1.31 1.775±0.93 3.509±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008H9 CIL_0008H9_0002 VISTA 4:98994411-99595982
CIL_0002G5 CIL_0002G5_0002 CGP 4:99030954-99259787
CIL_00085L CIL_00085L_0002 VISTA 4:99053164-99654624
CIL_00089A CIL_00089A_0002 VISTA 4:99074142-99675600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0005576 IEA extracellular region
GO:0005737 ISS cytoplasm
GO:0006508 IEA proteolysis
GO:0006914 ISS autophagy
GO:0008233 IEA peptidase activity
GO:0008234 ISA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317868 ATG4C-001 protein_coding Homo_sapiens 0 1688
ENST00000371118 ATG4C-004 protein_coding Homo_sapiens 0 713
ENST00000371120 ATG4C-002 protein_coding Homo_sapiens 0 1688
ENST00000414558 ATG4C-005 protein_coding Homo_sapiens 0 398
ENST00000443289 ATG4C-003 protein_coding Homo_sapiens 0 568

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