C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: c-myc binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030400 Mycbp-001 ENSMUSG00000028647 10090 + 4:123904832-123912269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030400 8.539±1.63 10.514±1.99 8.625±0.79 3.197±1.64 8.004±1.41 5.789±1.40 7.355±0.62 9.882±1.42 8.352±3.33 9.500±0.70 4.215±0.41 14.119±4.74 11.503±5.27 20.984±3.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000990 CIL_000990_0002 VISTA 4:123304867-123907516
CIL_0007Q3 CIL_0007Q3_0002 VISTA 4:123648792-124248792
CIL_0008G7 CIL_0008G7_0002 VISTA 4:123690360-124291795
CIL_0008PZ CIL_0008PZ_0002 VISTA 4:123735337-124336861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 ISS regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397572 MYCBP-001 protein_coding Homo_sapiens 0 1282
ENST00000437161 HSPA14-003 protein_coding Homo_sapiens 0.0001 53
ENST00000454994 GJA9-MYCBP-001 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000462027 MYCBP-002 processed_transcript Homo_sapiens 0 255
ENST00000465771 MYCBP-007 processed_transcript Homo_sapiens 0 453
ENST00000489575 GJA9-MYCBP-003 processed_transcript Homo_sapiens 0 412
ENST00000489803 GJA9-MYCBP-002 retained_intron Homo_sapiens 0 634
ENST00000494695 MYCBP-004 processed_transcript Homo_sapiens 0 608
ENST00000495043 MYCBP-003 processed_transcript Homo_sapiens 0 802
ENST00000568483 RP11-328J14.2-001 processed_pseudogene Homo_sapiens 0 370
ENST00000621281 GJA9-MYCBP-004 protein_coding Homo_sapiens 0 610
ENST00000622355 RP5-864K19.7-001 protein_coding Homo_sapiens 0 508

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