C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030460 Gpbp1l1-001 ENSMUSG00000034042 10090 + 4:116557658-116593882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030460 17.589±3.57 11.857±1.58 18.738±0.06 8.941±4.14 17.056±1.93 27.253±3.57 12.608±2.45 22.679±1.07 11.824±3.68 23.621±2.75 6.413±0.50 15.061±3.25 12.889±4.16 15.701±7.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NC CIL_0001NC_0002 CGP 4:116551633-116593882
CIL_000662 CIL_000662_0002 CGP 4:116557658-116600266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110639 gpbp1l1-201 protein_coding Danio_rerio 2e-20 106
ENST00000264779 GPBP1-002 protein_coding Homo_sapiens 0.00000000009 73
ENST00000290795 GPBP1L1-001 protein_coding Homo_sapiens 0 3118
ENST00000355105 GPBP1L1-201 protein_coding Homo_sapiens 0 2992
ENST00000424459 GPBP1-001 protein_coding Homo_sapiens 0.00000000002 77
ENST00000460859 GPBP1L1-005 processed_transcript Homo_sapiens 1e-39 167
ENST00000467032 GPBP1L1-013 processed_transcript Homo_sapiens 0 440
ENST00000468724 GPBP1L1-011 processed_transcript Homo_sapiens 0 414
ENST00000479235 GPBP1L1-003 processed_transcript Homo_sapiens 0 1539
ENST00000480083 GPBP1L1-008 processed_transcript Homo_sapiens 0 222
ENST00000480941 GPBP1L1-007 processed_transcript Homo_sapiens 0 233
ENST00000488278 GPBP1L1-006 processed_transcript Homo_sapiens 0 372
ENST00000493083 GPBP1L1-004 processed_transcript Homo_sapiens 2e-39 167
ENST00000495616 GPBP1L1-009 processed_transcript Homo_sapiens 0 274
ENST00000496278 GPBP1L1-002 processed_transcript Homo_sapiens 0 466
ENST00000498128 GPBP1L1-010 processed_transcript Homo_sapiens 0 470
ENST00000506184 GPBP1-003 protein_coding Homo_sapiens 0.00000000001 77
ENST00000511209 GPBP1-006 protein_coding Homo_sapiens 0.000000000009 77

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