C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424459 GPBP1-001 ENSG00000062194 9606 + 5:57173948-57264679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000424459
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000424459 2.513±0.12 1.525±0.16 1.779±0.00 0.891±0.00 0.615±0.00 1.862±0.29 0.650±0.00 4.165±1.34 1.237±0.17 5.362±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0001 VISTA 5:57082966-57684027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047627 Gpbp1-002 protein_coding Mus_musculus 0 4401
ENSMUST00000091236 Gpbp1-001 protein_coding Mus_musculus 0 2074
ENSMUST00000136471 Gpbp1-003 nonsense_mediated_decay Mus_musculus 0 1886
ENSMUST00000156221 Gpbp1-005 processed_transcript Mus_musculus 0 540
ENSMUST00000143331 Gpbp1-006 processed_transcript Mus_musculus 0 436
ENSMUST00000129638 Gpbp1-004 retained_intron Mus_musculus 0 420
ENSMUST00000106475 Gpbp1l1-002 protein_coding Mus_musculus 0.00000000002 77
ENSMUST00000030460 Gpbp1l1-001 protein_coding Mus_musculus 0.00000000002 77

Loading