C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264779 GPBP1-002 ENSG00000062194 9606 + 5:57214121-57263085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264779
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264779 10.939±0.00 15.931±0.00 17.378±0.00 10.335±0.00 18.090±0.00 4.491±0.00 8.199±4.95 5.423±0.00 12.375±8.81 5.952±0.00 14.234±4.24 9.796±5.88 38.724±12.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0001 VISTA 5:57082966-57684027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091236 Gpbp1-001 protein_coding Mus_musculus 0 2505
ENSMUST00000136471 Gpbp1-003 nonsense_mediated_decay Mus_musculus 0 1975
ENSMUST00000047627 Gpbp1-002 protein_coding Mus_musculus 0 1886
ENSMUST00000156221 Gpbp1-005 processed_transcript Mus_musculus 0 538
ENSMUST00000129638 Gpbp1-004 retained_intron Mus_musculus 0 536
ENSMUST00000143331 Gpbp1-006 processed_transcript Mus_musculus 0 435
ENSMUST00000106475 Gpbp1l1-002 protein_coding Mus_musculus 0.00000000009 73
ENSMUST00000030460 Gpbp1l1-001 protein_coding Mus_musculus 0.00000000009 73

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