C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich promoter binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506184 GPBP1-003 ENSG00000062194 9606 + 5:57174117-57263082 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506184
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506184 7.559±0.00 5.677±0.00 2.480±0.00 5.930±0.00 3.358±0.15 6.167±0.46 4.505±2.30 7.344±0.00 3.888±1.84 8.938±0.00 5.260±1.27 5.249±1.22 6.209±2.54 22.547±12.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089Y CIL_00089Y_0001 VISTA 5:57082966-57684027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091236 Gpbp1-001 protein_coding Mus_musculus 0 3783
ENSMUST00000136471 Gpbp1-003 nonsense_mediated_decay Mus_musculus 0 1969
ENSMUST00000047627 Gpbp1-002 protein_coding Mus_musculus 0 1905
ENSMUST00000156221 Gpbp1-005 processed_transcript Mus_musculus 0 538
ENSMUST00000129638 Gpbp1-004 retained_intron Mus_musculus 0 536
ENSMUST00000143331 Gpbp1-006 processed_transcript Mus_musculus 0 435
ENSMUST00000106475 Gpbp1l1-002 protein_coding Mus_musculus 0.00000000001 77
ENSMUST00000030460 Gpbp1l1-001 protein_coding Mus_musculus 0.00000000001 77

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