C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 20, subfamily A, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611416 CYP20A1-201 ENSG00000119004 9606 + 2:203238449-203305840 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000611416
Transcript ID Adrenal Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000611416 1.746±0.00 0.515±0.00 0.409±0.00 1.729±0.00 0.309±0.00 0.280±0.00 1.287±0.77 0.428±0.00 1.527±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QW CIL_0001QW_0001 CGP 2:203014879-203305840
CIL_0000JP CIL_0000JP_0002 CGP 2:203238449-203447723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004497 IEA monooxygenase activity
GO:0005506 IEA iron ion binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060608 Cyp20a1-001 protein_coding Mus_musculus 0 675
ENSMUST00000114202 Cyp20a1-002 retained_intron Mus_musculus 0 675
ENSMUST00000148443 Cyp20a1-003 nonsense_mediated_decay Mus_musculus 0 632
ENSMUST00000154432 Clip1-012 retained_intron Mus_musculus 0.00000000001 79
ENSMUST00000180290 Phospho2-201 protein_coding Mus_musculus 0.00000000001 79
ENSMUST00000182040 Slc22a15-004 processed_transcript Mus_musculus 0.00000000004 77
ENSMUST00000075452 Chic2-001 protein_coding Mus_musculus 0.0000000002 75
ENSMUST00000188843 Trmt1l-006 retained_intron Mus_musculus 0.0000000005 73
ENSMUST00000093951 Spata1-002 protein_coding Mus_musculus 0.0000000005 73
ENSMUST00000140125 Aim1l-002 retained_intron Mus_musculus 0.000000007 69
ENSMUST00000127089 Sms-003 retained_intron Mus_musculus 0.000000007 69
ENSMUST00000067443 Slfn5-001 protein_coding Mus_musculus 0.000000007 69
ENSMUST00000128820 Adc-003 retained_intron Mus_musculus 0.000000007 69
ENSMUST00000171115 Rangap1-203 protein_coding Mus_musculus 0.000000007 69
ENSMUST00000052374 Rangap1-201 protein_coding Mus_musculus 0.000000007 69
ENSMUST00000170134 Rangap1-202 protein_coding Mus_musculus 0.000000007 69
ENSMUST00000169948 Rchy1-004 protein_coding Mus_musculus 0.00000003 68
ENSMUST00000031345 Rchy1-001 protein_coding Mus_musculus 0.00000003 68
ENSMUST00000140670 Rchy1-002 processed_transcript Mus_musculus 0.00000003 68
ENSMUST00000141849 Zmat1-003 retained_intron Mus_musculus 0.00000003 68
ENSMUST00000151252 Zmat1-002 processed_transcript Mus_musculus 0.00000003 68
ENSMUST00000133285 Prim1-002 retained_intron Mus_musculus 0.00000009 66
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00002 58
ENSMUST00000146436 Accs-004 retained_intron Mus_musculus 0.00002 58
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00002 58
ENSMUST00000105140 AW011738-201 protein_coding Mus_musculus 0.0007 53

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