C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031588 Usp30-001 ENSMUSG00000029592 10090 + 5:114100333-114123506 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031588 9.224±0.77 18.505±1.24 5.967±2.70 11.058±3.28 8.898±1.64 7.868±0.74 3.793±0.61 10.699±0.96 5.010±2.07 8.904±0.28 2.088±0.46 12.927±3.74 6.068±1.90 7.447±4.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VR CIL_0001VR_0002 CGP 5:114026910-114123506
CIL_0001VU CIL_0001VU_0002 CGP 5:114100333-114128218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000422 ISS mitochondrion degradation
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 IMP ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005741 ISS mitochondrial outer membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008053 IMP mitochondrial fusion
GO:0016021 IEA integral component of membrane
GO:0016579 IMP protein deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257548 USP30-001 protein_coding Homo_sapiens 0 1683
ENST00000377883 USP30-004 nonsense_mediated_decay Homo_sapiens 0 730
ENST00000392784 USP30-002 protein_coding Homo_sapiens 0 1587
ENST00000467307 USP30-007 retained_intron Homo_sapiens 0 387
ENST00000470117 USP30-006 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000479219 USP30-003 retained_intron Homo_sapiens 0 723
ENST00000491362 USP30-005 retained_intron Homo_sapiens 0 597
ENST00000536393 USP30-008 protein_coding Homo_sapiens 0 243
ENST00000536723 USP30-010 protein_coding Homo_sapiens 0 556

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