C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135093-ENSG00000189046 CGP 9606 12:109023089-109093631
GeneTranscriptPositionBiotype
ENSG00000135093 (USP30)
ubiquitin specific peptidase 30 		ENST00000257548 (USP30-001) 109052586-109088026 protein_coding
ENST00000377883 (USP30-004) 109052604-109082917 nonsense_mediated_decay
ENST00000392784 (USP30-002) 109023089-109086377 protein_coding
ENST00000467307 (USP30-007) 109067594-109081628 retained_intron
ENST00000470117 (USP30-006) 109085063-109086324 nonsense_mediated_decay
ENST00000479219 (USP30-003) 109082536-109088023 retained_intron
ENST00000491362 (USP30-005) 109082695-109085922 retained_intron
ENST00000536393 (USP30-008) 109052642-109072347 protein_coding
ENST00000536723 (USP30-010) 109052591-109072350 protein_coding
ENST00000539121 (USP30-009) 109052896-109058096 protein_coding
ENSG00000189046 (ALKBH2)
alkB, alkylation repair homolog 2 (E. coli) 		ENST00000343075 (ALKBH2-001) 109088189-109093472 protein_coding
ENST00000429722 (ALKBH2-007) 109088197-109093459 protein_coding
ENST00000440112 (ALKBH2-003) 109088222-109092789 protein_coding
ENST00000536242 (ALKBH2-005) 109090037-109093469 protein_coding
ENST00000536358 (ALKBH2-008) 109090125-109093472 protein_coding
ENST00000536720 (ALKBH2-004) 109092255-109093631 retained_intron
ENST00000543444 (ALKBH2-009) 109089620-109092752 protein_coding
ENST00000619381 (ALKBH2-201) 109088188-109093488 protein_coding
ENSG00000212138 (RNA5SP372)
RNA, 5S ribosomal pseudogene 372 		ENST00000390836 (RNA5SP372-201) 109059986-109060100 rRNA
CIL_0001VU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029592-ENSMUSG00000044339 CGP 10090 5:114100333-114128218
GeneTranscriptPositionBiotype
ENSMUSG00000029592 (Usp30)
ubiquitin specific peptidase 30 		ENSMUST00000031588 (Usp30-001) 114100333-114123506 protein_coding
ENSMUSG00000044339 (Alkbh2)
alkB, alkylation repair homolog 2 (E. coli) 		ENSMUST00000053657 (Alkbh2-001) 114123926-114128176 protein_coding
ENSMUST00000112279 (Alkbh2-002) 114123935-114128218 protein_coding
ENSMUST00000149418 (Alkbh2-003) 114127606-114128181 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VU_0001ENSG00000135093ENST00000257548ENST00000377883ENST00000392784ENST00000467307ENST00000470117ENST00000479219ENST00000491362ENST00000536393ENST00000536723ENST00000539121ENSG00000189046ENST00000343075ENST00000429722ENST00000440112ENST00000536242ENST00000536358ENST00000536720ENST00000543444ENST00000619381ENSG00000212138ENST00000390836CIL_0001VU_0002ENSMUSG00000029592ENSMUST00000031588ENSMUSG00000044339ENSMUST00000053657ENSMUST00000112279ENSMUST00000149418
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VU_0001ENSG00000135093ENST00000257548ENST00000377883ENST00000392784ENST00000467307ENST00000479219ENSG00000189046ENST00000343075ENST00000429722ENST00000440112ENST00000536242ENST00000536358ENST00000536720ENST00000619381ENSG00000212138ENST00000390836CIL_0001VU_0002ENSMUSG00000029592ENSMUST00000031588ENSMUSG00000044339ENSMUST00000053657ENSMUST00000112279ENSMUST00000149418
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135093 ENST00000257548 3.831±0.00 0.827±0.00 N/A 4.640±2.58 2.114±1.59 1.143±0.13 1.640±0.63 3.363±0.20 1.426±0.59 0.749±0.17 2.270±1.74 2.767±2.12 2.242±0.36 3.352±0.02
ENST00000377883 N/A N/A N/A 2.019±0.00 1.052±0.00 N/A N/A N/A N/A N/A N/A 3.178±0.00 1.675±0.00 10.982±0.00
ENST00000392784 N/A 0.648±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.709±0.00
ENST00000467307 N/A N/A N/A N/A N/A N/A N/A N/A 3.951±0.00 N/A N/A N/A N/A N/A
ENST00000470117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479219 N/A 1.312±0.00 1.123±0.00 N/A 0.466±0.00 0.350±0.03 0.711±0.00 1.525±0.00 1.145±0.47 1.042±0.33 N/A 0.746±0.35 N/A N/A
ENST00000491362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189046 ENST00000343075 4.785±0.00 5.367±0.00 1.391±0.00 4.136±1.49 2.187±0.81 1.863±1.52 0.928±0.43 2.339±1.59 5.841±0.00 3.980±0.00 4.102±1.53 4.413±0.81 2.017±0.35 5.281±0.00
ENST00000429722 2.046±0.00 1.806±0.00 N/A 2.810±0.01 1.163±0.64 2.112±1.13 1.332±0.00 1.817±0.00 3.887±2.32 1.835±0.00 1.433±0.63 4.474±1.70 1.851±0.59 3.977±0.27
ENST00000440112 4.710±0.00 3.826±0.00 N/A 4.094±0.00 4.871±0.00 1.991±0.00 0.861±0.00 4.141±0.00 N/A N/A N/A 5.227±0.08 2.442±0.76 3.316±0.03
ENST00000536242 N/A N/A N/A 3.460±0.00 N/A 2.574±0.00 0.754±0.00 2.181±0.00 N/A N/A N/A N/A 1.056±0.00 N/A
ENST00000536358 N/A 1.915±0.00 N/A 1.061±0.00 N/A 0.327±0.00 N/A 0.974±0.00 N/A N/A N/A 6.392±0.00 0.970±0.00 4.813±0.00
ENST00000536720 N/A N/A 2.927±0.00 N/A 0.594±0.00 N/A N/A 2.265±0.00 N/A N/A N/A N/A N/A N/A
ENST00000543444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619381 N/A N/A N/A N/A N/A 0.864±0.00 0.633±0.00 N/A 0.592±0.00 N/A 1.019±0.52 4.876±0.00 N/A N/A
ENSG00000212138 ENST00000390836 N/A N/A N/A N/A N/A N/A 0.468±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029592 ENSMUST00000031588 9.224±0.77 18.505±1.24 5.967±2.70 11.058±3.28 8.898±1.64 7.868±0.74 3.793±0.61 10.699±0.96 5.010±2.07 8.904±0.28 2.088±0.46 12.927±3.74 6.068±1.90 7.447±4.45
ENSMUSG00000044339 ENSMUST00000053657 N/A N/A N/A N/A N/A N/A N/A 0.579±0.00 0.766±0.00 N/A 0.259±0.00 1.269±0.23 N/A 0.262±0.00
ENSMUST00000112279 5.401±0.20 4.842±1.48 3.832±0.20 4.411±1.28 3.744±1.14 4.176±1.42 0.869±0.49 3.772±0.73 3.684±0.71 3.188±0.30 0.637±0.22 7.248±2.18 10.140±3.06 0.899±0.30
ENSMUST00000149418 N/A 2.270±0.19 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.247±0.00 N/A N/A

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