C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial assembly of ribosomal large subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031839 Malsu1-201 ENSMUSG00000029815 10090 + 6:49073795-49084717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031839
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031839 23.997±1.15 51.180±12.06 27.558±0.00 23.464±6.76 36.105±17.07 26.956±2.10 16.059±1.08 25.667±7.81 19.606±5.82 20.720±2.85 38.516±1.98 42.034±8.95 37.528±18.82 50.985±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059M CIL_00059M_0002 CGP 6:49036518-49086751
CIL_0003DP CIL_0003DP_0002 CGP 6:49073795-49214954

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 ISS mitochondrion
GO:0042273 ISS ribosomal large subunit biogenesis
GO:0070130 IEA negative regulation of mitochondrial translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000287543 MALSU1-005 retained_intron Homo_sapiens 0 322
ENST00000466681 MALSU1-001 protein_coding Homo_sapiens 0 575
ENST00000476623 MALSU1-004 retained_intron Homo_sapiens 0 331
ENST00000479974 MALSU1-002 processed_transcript Homo_sapiens 6e-32 141
ENST00000481564 MALSU1-003 retained_intron Homo_sapiens 0 246

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