C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel, voltage-sensitive 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434054 CLCN2-003 ENSG00000114859 9606 - 3:184346398-184361603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000434054
Transcript ID Ovary Placenta Testis
ENST00000434054 11.658±0.00 1.483±0.00 9.468±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G3 CIL_0005G3_0001 CGP 3:184135038-184684758
CIL_00056Z CIL_00056Z_0001 CGP 3:184314495-184346275
CIL_000570 CIL_000570_0001 CGP 3:184335926-184361651
CIL_00056X CIL_00056X_0001 CGP 3:184346185-184368596

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005886 TAS plasma membrane
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0016020 IEA membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007207 Clcn2-001 protein_coding Mus_musculus 0 2771
ENSMUST00000153075 Clcn2-004 retained_intron Mus_musculus 0 2176
ENSMUST00000148131 Clcn2-003 retained_intron Mus_musculus 0 1567
ENSMUST00000131522 Clcn2-002 nonsense_mediated_decay Mus_musculus 0 1404
ENSMUST00000120099 Clcn2-005 protein_coding Mus_musculus 0 1404
ENSMUST00000131833 Clcn2-007 retained_intron Mus_musculus 0 399
ENSMUST00000132512 Clcn2-006 retained_intron Mus_musculus 0 346
ENSMUST00000114684 Clcn1-008 protein_coding Mus_musculus 5e-40 171
ENSMUST00000168660 Clcn1-005 nonsense_mediated_decay Mus_musculus 5e-40 171
ENSMUST00000169024 Clcn1-004 nonsense_mediated_decay Mus_musculus 5e-40 171
ENSMUST00000165780 Clcn1-006 nonsense_mediated_decay Mus_musculus 5e-40 171
ENSMUST00000163936 Clcn1-003 protein_coding Mus_musculus 5e-40 171
ENSMUST00000170028 Clcn1-002 nonsense_mediated_decay Mus_musculus 5e-40 171
ENSMUST00000031894 Clcn1-001 protein_coding Mus_musculus 5e-40 171
ENSMUST00000164091 Clcn1-007 nonsense_mediated_decay Mus_musculus 1e-36 159

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