C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031984 Smarcad1-201 ENSMUSG00000029920 10090 + 6:65042667-65116050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031984 2.725±1.68 1.922±0.70 4.104±0.29 12.508±7.59 2.330±1.07 1.305±0.49 1.214±0.44 1.515±1.14 2.961±1.92 3.135±1.07 1.088±0.11 4.553±1.79 4.694±2.13 1.544±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BX CIL_0005BX_0003 CGP 6:64729146-65116050
CIL_0000KQ CIL_0000KQ_0002 CGP 6:65042667-65144908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000018 ISS regulation of DNA recombination
GO:0000729 ISS DNA double-strand break processing
GO:0000792 IDA heterochromatin
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0035861 ISS site of double-strand break
GO:0043044 ISS ATP-dependent chromatin remodeling
GO:0043596 IEA nuclear replication fork
GO:0051304 ISS chromosome separation
GO:0070932 ISS histone H3 deacetylation
GO:0070933 ISS histone H4 deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354268 SMARCAD1-002 protein_coding Homo_sapiens 0 3866
ENST00000359052 SMARCAD1-005 protein_coding Homo_sapiens 0 3838
ENST00000394961 SMARCAD1-007 nonsense_mediated_decay Homo_sapiens 0 3565
ENST00000457823 SMARCAD1-001 protein_coding Homo_sapiens 0 3838
ENST00000506089 SMARCAD1-009 retained_intron Homo_sapiens 0 468
ENST00000509418 SMARCAD1-006 protein_coding Homo_sapiens 0 2377
ENST00000510105 SMARCAD1-004 nonsense_mediated_decay Homo_sapiens 0 1635
ENST00000514232 SMARCAD1-003 retained_intron Homo_sapiens 0 381

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