C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055294-ENSDARG00000014041 CGP 7955 8:30442028-30500457
GeneTranscriptPositionBiotype
ENSDARG00000014041 (smarcad1)
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 		ENSDART00000091409 (smarcad1-003) 30484010-30500457 protein_coding
ENSDART00000133047 (smarcad1-002) 30484473-30488541 protein_coding
ENSDART00000139029 (smarcad1-001) 30484010-30489770 protein_coding
ENSDART00000140597 (smarcad1-004) 30492464-30493149 retained_intron
ENSDART00000147798 (smarcad1-005) 30492425-30495527 retained_intron
ENSDARG00000055294 (atoh1a)
atonal homolog 1a 		ENSDART00000077642 (atoh1a-001) 30442028-30443657 protein_coding
ENSDARG00000092755 (AL807792.1)
 ENSDART00000131878 (AL807792.1-201) 30442039-30442927 pseudogene
ENSDARG00000096836 (si:ch211-247l22.4)
si:ch211-247l22.4 		ENSDART00000154459 (si:ch211-247l22.4-001) 30429537-30483965 lincRNA
CIL_0005BX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172238-ENSG00000163104 CGP 9606 4:93828753-94291292
GeneTranscriptPositionBiotype
ENSG00000163104 (SMARCAD1)
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 		ENST00000354268 (SMARCAD1-002) 94208047-94291292 protein_coding
ENST00000359052 (SMARCAD1-005) 94207611-94291290 protein_coding
ENST00000394961 (SMARCAD1-007) 94208084-94289899 nonsense_mediated_decay
ENST00000457823 (SMARCAD1-001) 94207845-94290821 protein_coding
ENST00000506089 (SMARCAD1-009) 94264528-94273700 retained_intron
ENST00000509418 (SMARCAD1-006) 94253294-94289704 protein_coding
ENST00000510105 (SMARCAD1-004) 94207866-94277159 nonsense_mediated_decay
ENST00000514232 (SMARCAD1-003) 94270567-94274921 retained_intron
ENSG00000172238 (ATOH1)
atonal homolog 1 (Drosophila) 		ENST00000306011 (ATOH1-001) 93828753-93830964 protein_coding
ENSG00000250897 (HMGB3P15)
high mobility group box 3 pseudogene 15 		ENST00000507326 (HMGB3P15-001) 94195940-94196513 processed_pseudogene
CIL_0005BX_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000073043-ENSMUSG00000029920 CGP 10090 6:64729146-65116050
GeneTranscriptPositionBiotype
ENSMUSG00000029920 (Smarcad1)
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 		ENSMUST00000031984 (Smarcad1-201) 65042667-65116050 protein_coding
ENSMUSG00000073043 (Atoh1)
atonal homolog 1 (Drosophila) 		ENSMUST00000101351 (Atoh1-201) 64729146-64731233 protein_coding
ENSMUSG00000086176 (Gm15534)
predicted gene 15534 		ENSMUST00000137642 (Gm15534-001) 64990955-64991508 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BX_0001ENSDARG00000014041ENSDART00000091409ENSDART00000133047ENSDART00000139029ENSDART00000140597ENSDART00000147798ENSDARG00000055294ENSDART00000077642ENSDARG00000092755ENSDART00000131878ENSDARG00000096836ENSDART00000154459CIL_0005BX_0002ENSG00000163104ENST00000354268ENST00000359052ENST00000394961ENST00000457823ENST00000506089ENST00000509418ENST00000510105ENST00000514232ENSG00000172238ENST00000306011ENSG00000250897ENST00000507326CIL_0005BX_0003ENSMUSG00000029920ENSMUST00000031984ENSMUSG00000073043ENSMUST00000101351ENSMUSG00000086176ENSMUST00000137642
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BX_0001ENSDARG00000014041ENSDART00000091409ENSDART00000139029ENSDARG00000055294ENSDART00000077642ENSDARG00000092755ENSDART00000131878ENSDARG00000096836ENSDART00000154459CIL_0005BX_0002ENSG00000163104ENST00000354268ENST00000359052ENST00000457823ENST00000509418ENSG00000172238ENST00000306011ENSG00000250897ENST00000507326CIL_0005BX_0003ENSMUSG00000029920ENSMUST00000031984ENSMUSG00000073043ENSMUST00000101351ENSMUSG00000086176ENSMUST00000137642
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014041 ENSDART00000091409 N/A N/A N/A 2.046±1.38 N/A N/A 0.881±0.84 6.638±5.95 0.843±0.00 N/A 0.475±0.00 N/A N/A N/A
ENSDART00000133047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139029 N/A N/A N/A N/A N/A N/A 0.560±0.14 0.100±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000140597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000055294 ENSDART00000077642 N/A N/A N/A N/A N/A N/A 0.398±0.00 0.043±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000092755 ENSDART00000131878 N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096836 ENSDART00000154459 N/A N/A N/A 0.810±0.00 N/A N/A 0.241±0.06 0.340±0.06 N/A N/A 0.061±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163104 ENST00000354268 1.046±0.00 0.617±0.00 N/A 1.407±0.51 N/A 0.264±0.00 0.810±0.00 2.087±0.00 0.817±0.00 0.858±0.00 N/A 2.029±0.67 2.154±1.59 3.063±1.92
ENST00000359052 N/A N/A N/A 1.279±0.00 2.590±0.00 N/A 0.596±0.38 N/A N/A 1.603±0.00 N/A 2.170±0.93 1.684±0.00 1.591±0.00
ENST00000394961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457823 0.738±0.00 1.295±0.00 0.950±0.00 0.855±0.30 1.514±0.66 1.191±0.18 0.608±0.27 1.402±0.00 N/A 0.332±0.00 0.522±0.21 1.317±0.00 1.014±0.00 2.505±0.00
ENST00000506089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509418 N/A N/A N/A 1.618±0.00 N/A 1.404±0.00 0.505±0.00 1.342±0.00 1.516±0.00 1.293±0.00 0.309±0.00 1.680±0.00 N/A 3.231±0.00
ENST00000510105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172238 ENST00000306011 N/A N/A N/A N/A 3.124±0.00 3.132±0.55 N/A 0.084±0.00 N/A N/A N/A 0.267±0.21 N/A 0.016±0.01
ENSG00000250897 ENST00000507326 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A 0.584±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029920 ENSMUST00000031984 2.725±1.68 1.922±0.70 4.104±0.29 12.508±7.59 2.330±1.07 1.305±0.49 1.214±0.44 1.515±1.14 2.961±1.92 3.135±1.07 1.088±0.11 4.553±1.79 4.694±2.13 1.544±0.70
ENSMUSG00000073043 ENSMUST00000101351 0.060±0.03 0.032±0.01 0.008±0.00 1.197±0.69 0.067±0.02 56.530±4.74 N/A 0.013±0.00 0.016±0.00 0.109±0.10 N/A 0.094±0.00 0.027±0.02 0.014±0.00
ENSMUSG00000086176 ENSMUST00000137642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.02

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