C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000KQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163104-ENSG00000163106 CGP 9606 4:94207611-94342876
GeneTranscriptPositionBiotype
ENSG00000163104 (SMARCAD1)
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
ENST00000354268 (SMARCAD1-002) 94208047-94291292 protein_coding
ENST00000359052 (SMARCAD1-005) 94207611-94291290 protein_coding
ENST00000394961 (SMARCAD1-007) 94208084-94289899 nonsense_mediated_decay
ENST00000457823 (SMARCAD1-001) 94207845-94290821 protein_coding
ENST00000506089 (SMARCAD1-009) 94264528-94273700 retained_intron
ENST00000509418 (SMARCAD1-006) 94253294-94289704 protein_coding
ENST00000510105 (SMARCAD1-004) 94207866-94277159 nonsense_mediated_decay
ENST00000514232 (SMARCAD1-003) 94270567-94274921 retained_intron
ENSG00000163106 (HPGDS)
hematopoietic prostaglandin D synthase
ENST00000295256 (HPGDS-001) 94298535-94342876 protein_coding
ENST00000506331 (HPGDS-002) 94334181-94342876 retained_intron
ENST00000514774 (HPGDS-003) 94303763-94342865 processed_transcript
CIL_0000KQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029920-ENSMUSG00000029919 CGP 10090 6:65042667-65144908
GeneTranscriptPositionBiotype
ENSMUSG00000029919 (Hpgds)
hematopoietic prostaglandin D synthase
ENSMUST00000031982 (Hpgds-001) 65117293-65144908 protein_coding
ENSMUST00000170252 (Hpgds-002) 65131980-65138271 retained_intron
ENSMUSG00000029920 (Smarcad1)
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
ENSMUST00000031984 (Smarcad1-201) 65042667-65116050 protein_coding
ENSMUSG00000090939 (Gm17147)
predicted gene 17147
ENSMUST00000164176 (Gm17147-001) 65128571-65129002 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KQ_0001ENSG00000163104ENST00000354268ENST00000359052ENST00000394961ENST00000457823ENST00000506089ENST00000509418ENST00000510105ENST00000514232ENSG00000163106ENST00000295256ENST00000506331ENST00000514774CIL_0000KQ_0002ENSMUSG00000029919ENSMUST00000031982ENSMUST00000170252ENSMUSG00000029920ENSMUST00000031984ENSMUSG00000090939ENSMUST00000164176
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KQ_0001ENSG00000163104ENST00000354268ENST00000359052ENST00000457823ENST00000509418ENSG00000163106ENST00000295256ENST00000506331ENST00000514774CIL_0000KQ_0002ENSMUSG00000029919ENSMUST00000031982ENSMUST00000170252ENSMUSG00000029920ENSMUST00000031984ENSMUSG00000090939ENSMUST00000164176
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163104 ENST00000354268 1.046±0.00 0.617±0.00 N/A 1.407±0.51 N/A 0.264±0.00 0.810±0.00 2.087±0.00 0.817±0.00 0.858±0.00 N/A 2.029±0.67 2.154±1.59 3.063±1.92
ENST00000359052 N/A N/A N/A 1.279±0.00 2.590±0.00 N/A 0.596±0.38 N/A N/A 1.603±0.00 N/A 2.170±0.93 1.684±0.00 1.591±0.00
ENST00000394961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457823 0.738±0.00 1.295±0.00 0.950±0.00 0.855±0.30 1.514±0.66 1.191±0.18 0.608±0.27 1.402±0.00 N/A 0.332±0.00 0.522±0.21 1.317±0.00 1.014±0.00 2.505±0.00
ENST00000506089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509418 N/A N/A N/A 1.618±0.00 N/A 1.404±0.00 0.505±0.00 1.342±0.00 1.516±0.00 1.293±0.00 0.309±0.00 1.680±0.00 N/A 3.231±0.00
ENST00000510105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163106 ENST00000295256 0.248±0.00 1.407±0.00 0.084±0.00 0.324±0.02 1.464±0.42 0.942±0.54 0.576±0.00 0.209±0.00 0.378±0.33 1.808±0.49 0.196±0.00 0.596±0.25 10.299±4.96 0.816±0.35
ENST00000506331 N/A N/A 0.348±0.00 N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A 0.907±0.00 N/A N/A
ENST00000514774 0.295±0.00 N/A N/A 0.385±0.00 1.446±0.00 2.333±0.00 0.249±0.00 N/A 0.447±0.38 N/A 0.647±0.00 0.464±0.07 7.029±3.64 0.501±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029919 ENSMUST00000031982 1.446±0.38 0.281±0.13 1.198±0.13 1.144±0.16 0.761±0.24 0.753±0.18 0.138±0.07 0.380±0.05 0.507±0.40 0.339±0.13 0.080±0.02 2.873±1.36 2.692±1.57 0.249±0.13
ENSMUST00000170252 N/A 0.645±0.00 N/A N/A 1.701±0.00 1.127±0.37 0.403±0.00 N/A N/A 0.513±0.00 0.118±0.00 4.023±0.64 N/A N/A
ENSMUSG00000029920 ENSMUST00000031984 2.725±1.68 1.922±0.70 4.104±0.29 12.508±7.59 2.330±1.07 1.305±0.49 1.214±0.44 1.515±1.14 2.961±1.92 3.135±1.07 1.088±0.11 4.553±1.79 4.694±2.13 1.544±0.70
ENSMUSG00000090939 ENSMUST00000164176 2.097±0.81 0.418±0.16 N/A 0.460±0.09 1.009±0.41 0.737±0.32 0.229±0.11 0.309±0.07 0.243±0.11 0.607±0.11 N/A 1.721±0.85 0.383±0.28 0.537±0.28

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