C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509418 SMARCAD1-006 ENSG00000163104 9606 + 4:94253294-94289704 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryTestisENST00000509418
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000509418 1.618±0.00 1.404±0.00 0.505±0.00 1.342±0.00 1.516±0.00 1.293±0.00 0.309±0.00 1.680±0.00 3.231±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BX CIL_0005BX_0002 CGP 4:93828753-94291292
CIL_0000KQ CIL_0000KQ_0001 CGP 4:94207611-94342876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000018 IEP regulation of DNA recombination
GO:0000729 IMP DNA double-strand break processing
GO:0000792 ISS heterochromatin
GO:0003676 NAS nucleic acid binding
GO:0003677 IDA:IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006338 NAS chromatin remodeling
GO:0009117 NAS nucleotide metabolic process
GO:0016363 NAS nuclear matrix
GO:0016568 NAS chromatin modification
GO:0016787 IEA hydrolase activity
GO:0035861 IDA site of double-strand break
GO:0043044 IMP ATP-dependent chromatin remodeling
GO:0043596 IDA nuclear replication fork
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0051260 NAS protein homooligomerization
GO:0051304 IMP chromosome separation
GO:0070932 IMP histone H3 deacetylation
GO:0070933 IMP histone H4 deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031984 Smarcad1-201 protein_coding Mus_musculus 0 2377

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