C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457823 SMARCAD1-001 ENSG00000163104 9606 + 4:94207845-94290821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000457823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000457823 0.738±0.00 1.295±0.00 0.950±0.00 0.855±0.30 1.514±0.66 1.191±0.18 0.608±0.27 1.402±0.00 0.332±0.00 0.522±0.21 1.317±0.00 1.014±0.00 2.505±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BX CIL_0005BX_0002 CGP 4:93828753-94291292
CIL_0000KQ CIL_0000KQ_0001 CGP 4:94207611-94342876

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000018 IEP regulation of DNA recombination
GO:0000729 IMP DNA double-strand break processing
GO:0000792 ISS heterochromatin
GO:0003676 NAS nucleic acid binding
GO:0003677 IDA:IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006338 NAS chromatin remodeling
GO:0009117 NAS nucleotide metabolic process
GO:0016363 NAS nuclear matrix
GO:0016568 NAS chromatin modification
GO:0016787 IEA hydrolase activity
GO:0035861 IDA site of double-strand break
GO:0043044 IMP ATP-dependent chromatin remodeling
GO:0043596 IDA nuclear replication fork
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0051260 NAS protein homooligomerization
GO:0051304 IMP chromosome separation
GO:0070932 IMP histone H3 deacetylation
GO:0070933 IMP histone H4 deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031984 Smarcad1-201 protein_coding Mus_musculus 0 3838

Loading