C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and cysteine-rich domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032376 Lmcd1-001 ENSMUSG00000057604 10090 + 6:112273758-112330425 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032376 6.668±2.65 4.148±0.72 71.371±8.03 2.715±0.24 4.237±2.62 1.213±0.45 8.468±1.01 5.707±0.59 0.349±0.24 6.585±0.07 35.177±4.80 10.017±2.25 6.213±3.26 0.502±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AB CIL_0003AB_0002 CGP 6:110645581-112330425
CIL_000001 CIL_000001_0002 CGP 6:112273758-112388023

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010611 IMP regulation of cardiac muscle hypertrophy
GO:0031012 IEA extracellular matrix
GO:0070886 IMP positive regulation of calcineurin-NFAT signaling cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000157600 LMCD1-001 protein_coding Homo_sapiens 0 1380
ENST00000397386 LMCD1-201 protein_coding Homo_sapiens 0 854
ENST00000454244 LMCD1-002 protein_coding Homo_sapiens 0 1166
ENST00000456506 LMCD1-003 nonsense_mediated_decay Homo_sapiens 0 854

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