C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC13 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032440 Sec13-001 ENSMUSG00000030298 10090 - 6:113728067-113740743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032440 87.304±4.25 40.764±6.47 69.810±17.46 55.192±32.12 49.882±7.29 68.023±11.97 36.455±2.62 52.509±3.46 56.309±20.36 49.680±6.89 32.491±5.66 78.581±15.14 69.533±30.56 47.493±15.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064V CIL_00064V_0002 CGP 6:113716119-113740743
CIL_00064R CIL_00064R_0002 CGP 6:113728067-114042613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0005635 IEA nuclear envelope
GO:0005783 ISO endoplasmic reticulum
GO:0006888 ISA ER to Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0031080 ISS nuclear pore outer ring
GO:0031410 IEA cytoplasmic vesicle
GO:0051028 IEA mRNA transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337354 SEC13-002 protein_coding Homo_sapiens 0 1230
ENST00000350697 SEC13-001 protein_coding Homo_sapiens 0 1247
ENST00000383801 SEC13-003 protein_coding Homo_sapiens 0 1230
ENST00000397109 SEC13-004 protein_coding Homo_sapiens 0 1227
ENST00000397117 SEC13-005 protein_coding Homo_sapiens 0 1090
ENST00000429534 SEC13P1-001 processed_pseudogene Homo_sapiens 0 894
ENST00000476597 SEC13-018 retained_intron Homo_sapiens 0 523
ENST00000477547 SEC13-014 retained_intron Homo_sapiens 0 1070
ENST00000479868 SEC13-015 retained_intron Homo_sapiens 0 1026
ENST00000481581 GLB1-019 processed_transcript Homo_sapiens 7e-25 117
ENST00000490283 SEC13-017 retained_intron Homo_sapiens 0 250
ENST00000492602 SEC13-013 processed_transcript Homo_sapiens 0 243
ENST00000497796 GLB1-016 processed_transcript Homo_sapiens 0 265

Loading