C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 101
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032956 Ccdc101-001 ENSMUSG00000030714 10090 + 7:126649309-126672925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032956 10.073±0.99 11.240±2.11 7.600±0.00 15.053±1.31 11.938±0.78 20.815±1.15 4.892±1.05 7.487±1.21 10.088±3.01 11.485±0.81 8.612±2.03 16.669±3.82 7.363±2.82 139.390±15.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WL CIL_0004WL_0002 CGP 7:126623249-126672925
CIL_0004WI CIL_0004WI_0002 CGP 7:126649309-126676432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005671 ISS Ada2/Gcn5/Ada3 transcription activator complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0035064 ISS methylated histone binding
GO:0043966 IEA histone H3 acetylation
GO:0070461 ISS SAGA-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317058 CCDC101-001 protein_coding Homo_sapiens 0 1184
ENST00000549390 RP11-347C12.3-002 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000549858 RP11-345J4.3-003 protein_coding Homo_sapiens 0 366
ENST00000549950 RP11-345J4.3-001 protein_coding Homo_sapiens 0 268
ENST00000550538 RP11-347C12.3-001 protein_coding Homo_sapiens 0 268
ENST00000551411 RP11-345J4.3-002 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000564682 CCDC101-002 retained_intron Homo_sapiens 0 220
ENST00000565945 CCDC101-006 retained_intron Homo_sapiens 0 379
ENST00000566470 RP11-347C12.3-004 retained_intron Homo_sapiens 4.2039e-45 185
ENST00000567447 CCDC101-005 retained_intron Homo_sapiens 0 614
ENST00000567564 CCDC101-004 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000568353 RP11-347C12.3-003 protein_coding Homo_sapiens 0 366
ENST00000569581 CCDC101-003 retained_intron Homo_sapiens 0 394
ENST00000621738 RP11-666O2.5-001 unprocessed_pseudogene Homo_sapiens 0 285

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