C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396394 PSMA1-001 ENSG00000129084 9606 - 11:14504876-14520696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396394
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396394 42.884±0.00 53.084±0.00 3.517±0.00 25.329±16.34 49.482±0.00 42.320±0.00 40.872±0.00 42.542±0.00 44.989±0.00 50.328±0.00 28.182±19.75 39.936±16.84 53.168±16.19 51.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PO CIL_0003PO_0001 CGP 11:14443440-14520344
CIL_0003ZT CIL_0003ZT_0001 CGP 11:14504874-14872044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0000502 IDA proteasome complex
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003723 TAS RNA binding
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005839 IEA:ISS proteasome core complex
GO:0005844 TAS polysome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0044281 TAS small molecule metabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051603 IEA proteolysis involved in cellular protein catabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033008 Psma1-001 protein_coding Mus_musculus 0 1345
ENSMUST00000135570 Psma1-004 processed_transcript Mus_musculus 0 1123
ENSMUST00000154909 Psma1-002 retained_intron Mus_musculus 0 479
ENSMUST00000123801 Psma1-003 retained_intron Mus_musculus 0 285
ENSMUST00000120601 Gm11637-001 processed_pseudogene Mus_musculus 0 237

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