C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, nonvoltage-gated 1 beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033161 Scnn1b-201 ENSMUSG00000030873 10090 + 7:121865111-121918515 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033161 1.416±1.18 0.250±0.06 5.190±0.20 0.059±0.01 2.381±0.52 9.222±3.50 0.039±0.01 28.421±5.89 0.023±0.02 61.820±10.33 0.060±0.02 0.982±0.70 10.923±3.33 0.127±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D7 CIL_0006D7_0002 CGP 7:121734479-121918515
CIL_0006D6 CIL_0006D6_0002 CGP 7:121865111-121981711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IDA sodium channel activity
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006814 IDA sodium ion transport
GO:0009897 IDA external side of plasma membrane
GO:0015280 IDA ligand-gated sodium channel activity
GO:0016020 IDA membrane
GO:0016021 IDA integral component of membrane
GO:0034706 IGI sodium channel complex
GO:0035725 IEA sodium ion transmembrane transport
GO:0050699 IPI WW domain binding
GO:0050891 ISS multicellular organismal water homeostasis
GO:0050896 IEA response to stimulus
GO:0050909 IEA sensory perception of taste
GO:0055078 ISS sodium ion homeostasis
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307331 SCNN1B-002 protein_coding Homo_sapiens 0 1866
ENST00000343070 SCNN1B-001 protein_coding Homo_sapiens 0 1869
ENST00000564275 SCNN1B-005 nonsense_mediated_decay Homo_sapiens 0 1068
ENST00000566870 SCNN1B-009 retained_intron Homo_sapiens 0 303
ENST00000568085 SCNN1B-006 protein_coding Homo_sapiens 0 970
ENST00000568923 SCNN1B-007 protein_coding Homo_sapiens 0 1234
ENST00000569789 SCNN1B-008 processed_transcript Homo_sapiens 0 484

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