C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033171 Arfip2-004 ENSMUSG00000030881 10090 - 7:105635621-105640314 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyOvaryPlacentaENSMUST00000033171
Transcript ID Colon Kidney Ovary Placenta
ENSMUST00000033171 17.826±0.00 12.507±1.88 23.245±0.07 18.937±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A8 CIL_0004A8_0002 CGP 7:105604463-105640416
CIL_0004HY CIL_0004HY_0002 CGP 7:105634203-105655748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254584 ARFIP2-008 protein_coding Homo_sapiens 0 2108
ENST00000396777 ARFIP2-001 protein_coding Homo_sapiens 0 2241
ENST00000423813 ARFIP2-010 protein_coding Homo_sapiens 0 1681
ENST00000445086 ARFIP2-009 protein_coding Homo_sapiens 0 1448
ENST00000525235 ARFIP2-005 protein_coding Homo_sapiens 0 896
ENST00000529847 ARFIP2-002 retained_intron Homo_sapiens 0 283
ENST00000530410 ARFIP2-003 retained_intron Homo_sapiens 0 446
ENST00000531037 ARFIP2-007 nonsense_mediated_decay Homo_sapiens 0 1286
ENST00000614314 ARFIP2-201 protein_coding Homo_sapiens 0 1901

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