C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033173 Polr3e-201 ENSMUSG00000030880 10090 + 7:120917744-120947432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033173 4.765±0.90 6.420±2.10 5.722±0.97 6.394±0.79 5.210±1.64 6.676±0.92 1.688±0.39 10.814±0.65 4.452±1.87 5.602±0.13 2.904±0.23 10.395±2.66 13.433±3.07 8.494±2.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005T8 CIL_0005T8_0002 CGP 7:120842831-120947432
CIL_0006GX CIL_0006GX_0002 CGP 7:120917744-120982312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005813 IEA centrosome
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0045087 IEA innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299853 POLR3E-001 protein_coding Homo_sapiens 0 3387
ENST00000359210 POLR3E-004 protein_coding Homo_sapiens 0 2442
ENST00000418581 POLR3E-003 protein_coding Homo_sapiens 0 2651
ENST00000561494 POLR3E-011 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000563024 POLR3E-009 protein_coding Homo_sapiens 0 531
ENST00000563282 POLR3E-017 retained_intron Homo_sapiens 0 364
ENST00000563766 POLR3E-006 retained_intron Homo_sapiens 0 407
ENST00000564061 POLR3E-005 retained_intron Homo_sapiens 0 2294
ENST00000564209 POLR3E-002 protein_coding Homo_sapiens 0 2471
ENST00000564256 POLR3E-014 processed_transcript Homo_sapiens 0 494
ENST00000564750 POLR3E-007 nonsense_mediated_decay Homo_sapiens 0 2379
ENST00000564883 POLR3E-013 protein_coding Homo_sapiens 0 481
ENST00000565117 POLR3E-008 retained_intron Homo_sapiens 0 902
ENST00000565358 POLR3E-012 protein_coding Homo_sapiens 0 584
ENST00000565551 POLR3E-016 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000569757 POLR3E-015 protein_coding Homo_sapiens 0 566
ENST00000569787 POLR3E-018 retained_intron Homo_sapiens 0 752
ENST00000615879 POLR3E-201 protein_coding Homo_sapiens 0 3162

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